Gene : SMT2 A. thaliana TAIR10
Primary Identifier:  ? AT1G20330 Defline:  (1 of 2) 2.1.1.142//2.1.1.143 - Cycloartenol 24-C-methyltransferase / Sterol C-methyltransferase // 24-methylenesterol C-methyltransferase / SMT(2)
Genomic Order:  2045 Name:  ? AT1G20330
Secondary Identifier:  ? PAC:19651783
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-2541 Arabidopsis thaliana pathologic  

Genomics

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Expression

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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G20330 0.5kb upstream 0.5kb upstream 1972 true Chr1: 7038688-7040659 Arabidopsis thaliana
AT1G20330 0.5kb upstream 0.5kb upstream 500 false Chr1: 7040160-7040659 Arabidopsis thaliana
AT1G20330 0.5kb downstream 0.5kb downstream 1972 true Chr1: 7038188-7040159 Arabidopsis thaliana
AT1G20330 0.5kb downstream 0.5kb downstream 500 false Chr1: 7038188-7038687 Arabidopsis thaliana
AT1G20330 1.0kb upstream 1.0kb upstream 2472 true Chr1: 7038688-7041159 Arabidopsis thaliana
AT1G20330 1.0kb upstream 1.0kb upstream 1000 false Chr1: 7040160-7041159 Arabidopsis thaliana
AT1G20330 1.0kb downstream 1.0kb downstream 2472 true Chr1: 7037688-7040159 Arabidopsis thaliana
AT1G20330 1.0kb downstream 1.0kb downstream 1000 false Chr1: 7037688-7038687 Arabidopsis thaliana
AT1G20330 2.0kb upstream 2.0kb upstream 3472 true Chr1: 7038688-7042159 Arabidopsis thaliana
AT1G20330 2.0kb upstream 2.0kb upstream 2000 false Chr1: 7040160-7042159 Arabidopsis thaliana
AT1G20330 2.0kb downstream 2.0kb downstream 3472 true Chr1: 7036688-7040159 Arabidopsis thaliana
AT1G20330 2.0kb downstream 2.0kb downstream 2000 false Chr1: 7036688-7038687 Arabidopsis thaliana
AT1G20330 5.0kb upstream 5.0kb upstream 6472 true Chr1: 7038688-7045159 Arabidopsis thaliana
AT1G20330 5.0kb upstream 5.0kb upstream 5000 false Chr1: 7040160-7045159 Arabidopsis thaliana
AT1G20330 5.0kb downstream 5.0kb downstream 6472 true Chr1: 7033688-7040159 Arabidopsis thaliana
AT1G20330 5.0kb downstream 5.0kb downstream 5000 false Chr1: 7033688-7038687 Arabidopsis thaliana
AT1G20330 10.0kb upstream 10.0kb upstream 11472 true Chr1: 7038688-7050159 Arabidopsis thaliana
AT1G20330 10.0kb upstream 10.0kb upstream 10000 false Chr1: 7040160-7050159 Arabidopsis thaliana
AT1G20330 10.0kb downstream 10.0kb downstream 11472 true Chr1: 7028688-7040159 Arabidopsis thaliana
AT1G20330 10.0kb downstream 10.0kb downstream 10000 false Chr1: 7028688-7038687 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373662 5261 Brassicaceae View MSA
123838887 5264 Brassicales-Malvales View MSA
124346490 5266 SBM View MSA
124253905 5268 Malvidae View MSA
124062821 5270 Rosid View MSA
123749878 5271 Pentapetalae View MSA
122793633 5272 Eudicot View MSA
122047271 5273 Angiosperm View MSA
121344259 5274 Embryophyte View MSA
123426805 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 109.44     High  
cufflinks 93.434     High  
cufflinks 68.672     High Low
cufflinks 105.893     High  
cufflinks 71.24     High Low
cufflinks 108.663     High  

0 Strain