Gene : CLH1 A. thaliana TAIR10
Primary Identifier:  ? AT1G19670 Defline:  (1 of 1) PTHR33428//PTHR33428:SF2 - FAMILY NOT NAMED // CHLOROPHYLLASE-1
Genomic Order:  1980 Name:  ? AT1G19670
Secondary Identifier:  ? PAC:19650922
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-5098 Arabidopsis thaliana pathologic  
Athaliana PWY-6927 Arabidopsis thaliana pathologic  

Genomics

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Expression

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4 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G19670 0.5kb upstream 0.5kb upstream 1934 true Chr1: 6803611-6805544 Arabidopsis thaliana
AT1G19670 0.5kb upstream 0.5kb upstream 500 false Chr1: 6805045-6805544 Arabidopsis thaliana
AT1G19670 0.5kb downstream 0.5kb downstream 1934 true Chr1: 6803111-6805044 Arabidopsis thaliana
AT1G19670 0.5kb downstream 0.5kb downstream 500 false Chr1: 6803111-6803610 Arabidopsis thaliana
AT1G19670 1.0kb upstream 1.0kb upstream 2434 true Chr1: 6803611-6806044 Arabidopsis thaliana
AT1G19670 1.0kb upstream 1.0kb upstream 1000 false Chr1: 6805045-6806044 Arabidopsis thaliana
AT1G19670 1.0kb downstream 1.0kb downstream 2434 true Chr1: 6802611-6805044 Arabidopsis thaliana
AT1G19670 1.0kb downstream 1.0kb downstream 1000 false Chr1: 6802611-6803610 Arabidopsis thaliana
AT1G19670 2.0kb upstream 2.0kb upstream 3434 true Chr1: 6803611-6807044 Arabidopsis thaliana
AT1G19670 2.0kb upstream 2.0kb upstream 2000 false Chr1: 6805045-6807044 Arabidopsis thaliana
AT1G19670 2.0kb downstream 2.0kb downstream 3434 true Chr1: 6801611-6805044 Arabidopsis thaliana
AT1G19670 2.0kb downstream 2.0kb downstream 2000 false Chr1: 6801611-6803610 Arabidopsis thaliana
AT1G19670 5.0kb upstream 5.0kb upstream 6434 true Chr1: 6803611-6810044 Arabidopsis thaliana
AT1G19670 5.0kb upstream 5.0kb upstream 5000 false Chr1: 6805045-6810044 Arabidopsis thaliana
AT1G19670 5.0kb downstream 5.0kb downstream 6434 true Chr1: 6798611-6805044 Arabidopsis thaliana
AT1G19670 5.0kb downstream 5.0kb downstream 5000 false Chr1: 6798611-6803610 Arabidopsis thaliana
AT1G19670 10.0kb upstream 10.0kb upstream 11434 true Chr1: 6803611-6815044 Arabidopsis thaliana
AT1G19670 10.0kb upstream 10.0kb upstream 10000 false Chr1: 6805045-6815044 Arabidopsis thaliana
AT1G19670 10.0kb downstream 10.0kb downstream 11434 true Chr1: 6793611-6805044 Arabidopsis thaliana
AT1G19670 10.0kb downstream 10.0kb downstream 10000 false Chr1: 6793611-6803610 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026648 5273 Angiosperm View MSA
122361862 5261 Brassicaceae View MSA
123798261 5264 Brassicales-Malvales View MSA
124339978 5266 SBM View MSA
124247394 5268 Malvidae View MSA
124064718 5270 Rosid View MSA
123753508 5271 Pentapetalae View MSA
122795782 5272 Eudicot View MSA
121296450 5274 Embryophyte View MSA
123428003 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 79.792     High  
cufflinks 0.032     Low Low
cufflinks 155.104     High  
cufflinks 0.565        
cufflinks 176.575     High  
cufflinks 0.2     Low  

0 Strain