Gene : AT2G16940 A. thaliana TAIR10
Defline:  (1 of 1) PTHR24012:SF388 - SPLICING FACTOR, CC1-LIKE PROTEIN Genomic Order:  918
Name:  ? AT2G16940 Secondary Identifier:  ? PAC:19639148
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G16940 0.5kb upstream 0.5kb upstream 5302 true Chr2: 7342607-7347908 Arabidopsis thaliana
AT2G16940 0.5kb upstream 0.5kb upstream 500 false Chr2: 7347409-7347908 Arabidopsis thaliana
AT2G16940 0.5kb downstream 0.5kb downstream 5302 true Chr2: 7342107-7347408 Arabidopsis thaliana
AT2G16940 0.5kb downstream 0.5kb downstream 500 false Chr2: 7342107-7342606 Arabidopsis thaliana
AT2G16940 1.0kb upstream 1.0kb upstream 5802 true Chr2: 7342607-7348408 Arabidopsis thaliana
AT2G16940 1.0kb upstream 1.0kb upstream 1000 false Chr2: 7347409-7348408 Arabidopsis thaliana
AT2G16940 1.0kb downstream 1.0kb downstream 5802 true Chr2: 7341607-7347408 Arabidopsis thaliana
AT2G16940 1.0kb downstream 1.0kb downstream 1000 false Chr2: 7341607-7342606 Arabidopsis thaliana
AT2G16940 2.0kb upstream 2.0kb upstream 6802 true Chr2: 7342607-7349408 Arabidopsis thaliana
AT2G16940 2.0kb upstream 2.0kb upstream 2000 false Chr2: 7347409-7349408 Arabidopsis thaliana
AT2G16940 2.0kb downstream 2.0kb downstream 6802 true Chr2: 7340607-7347408 Arabidopsis thaliana
AT2G16940 2.0kb downstream 2.0kb downstream 2000 false Chr2: 7340607-7342606 Arabidopsis thaliana
AT2G16940 5.0kb upstream 5.0kb upstream 9802 true Chr2: 7342607-7352408 Arabidopsis thaliana
AT2G16940 5.0kb upstream 5.0kb upstream 5000 false Chr2: 7347409-7352408 Arabidopsis thaliana
AT2G16940 5.0kb downstream 5.0kb downstream 9802 true Chr2: 7337607-7347408 Arabidopsis thaliana
AT2G16940 5.0kb downstream 5.0kb downstream 5000 false Chr2: 7337607-7342606 Arabidopsis thaliana
AT2G16940 10.0kb upstream 10.0kb upstream 14802 true Chr2: 7342607-7357408 Arabidopsis thaliana
AT2G16940 10.0kb upstream 10.0kb upstream 10000 false Chr2: 7347409-7357408 Arabidopsis thaliana
AT2G16940 10.0kb downstream 10.0kb downstream 14802 true Chr2: 7332607-7347408 Arabidopsis thaliana
AT2G16940 10.0kb downstream 10.0kb downstream 10000 false Chr2: 7332607-7342606 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361251 5261 Brassicaceae View MSA
123829205 5264 Brassicales-Malvales View MSA
124336955 5266 SBM View MSA
124240263 5268 Malvidae View MSA
124068608 5270 Rosid View MSA
123744979 5271 Pentapetalae View MSA
122786536 5272 Eudicot View MSA
122047022 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121344314 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.043        
cufflinks 7.643        
cufflinks 6.412        
cufflinks 8.205       High
cufflinks 5.822       Low
cufflinks 6.689        

0 Strain