Gene : AT1G80140 A. thaliana TAIR10
Defline:  (1 of 1) PTHR31375:SF45 - PECTIN LYASE-LIKE PROTEIN Genomic Order:  6991
Name:  ? AT1G80140 Secondary Identifier:  ? PAC:19651806
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-1081 Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G80140 0.5kb upstream 0.5kb upstream 2070 true Chr1: 30146111-30148180 Arabidopsis thaliana
AT1G80140 0.5kb upstream 0.5kb upstream 500 false Chr1: 30146111-30146610 Arabidopsis thaliana
AT1G80140 0.5kb downstream 0.5kb downstream 2070 true Chr1: 30146611-30148680 Arabidopsis thaliana
AT1G80140 0.5kb downstream 0.5kb downstream 500 false Chr1: 30148181-30148680 Arabidopsis thaliana
AT1G80140 1.0kb upstream 1.0kb upstream 2570 true Chr1: 30145611-30148180 Arabidopsis thaliana
AT1G80140 1.0kb upstream 1.0kb upstream 1000 false Chr1: 30145611-30146610 Arabidopsis thaliana
AT1G80140 1.0kb downstream 1.0kb downstream 2570 true Chr1: 30146611-30149180 Arabidopsis thaliana
AT1G80140 1.0kb downstream 1.0kb downstream 1000 false Chr1: 30148181-30149180 Arabidopsis thaliana
AT1G80140 2.0kb upstream 2.0kb upstream 3570 true Chr1: 30144611-30148180 Arabidopsis thaliana
AT1G80140 2.0kb upstream 2.0kb upstream 2000 false Chr1: 30144611-30146610 Arabidopsis thaliana
AT1G80140 2.0kb downstream 2.0kb downstream 3570 true Chr1: 30146611-30150180 Arabidopsis thaliana
AT1G80140 2.0kb downstream 2.0kb downstream 2000 false Chr1: 30148181-30150180 Arabidopsis thaliana
AT1G80140 5.0kb upstream 5.0kb upstream 6570 true Chr1: 30141611-30148180 Arabidopsis thaliana
AT1G80140 5.0kb upstream 5.0kb upstream 5000 false Chr1: 30141611-30146610 Arabidopsis thaliana
AT1G80140 5.0kb downstream 5.0kb downstream 6570 true Chr1: 30146611-30153180 Arabidopsis thaliana
AT1G80140 5.0kb downstream 5.0kb downstream 5000 false Chr1: 30148181-30153180 Arabidopsis thaliana
AT1G80140 10.0kb upstream 10.0kb upstream 11570 true Chr1: 30136611-30148180 Arabidopsis thaliana
AT1G80140 10.0kb upstream 10.0kb upstream 10000 false Chr1: 30136611-30146610 Arabidopsis thaliana
AT1G80140 10.0kb downstream 10.0kb downstream 11570 true Chr1: 30146611-30158180 Arabidopsis thaliana
AT1G80140 10.0kb downstream 10.0kb downstream 10000 false Chr1: 30148181-30158180 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372819 5261 Brassicaceae View MSA
123834212 5264 Brassicales-Malvales View MSA
124346856 5266 SBM View MSA
124252748 5268 Malvidae View MSA
124074380 5270 Rosid View MSA
123753570 5271 Pentapetalae View MSA
122797497 5272 Eudicot View MSA
122051291 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain