Gene : AT1G60230 A. thaliana TAIR10
Defline:  (1 of 1) PTHR30544//PTHR30544:SF3 - 23S RRNA METHYLTRANSFERASE // SUBFAMILY NOT NAMED Genomic Order:  4920
Name:  ? AT1G60230 Secondary Identifier:  ? PAC:19649802
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G60230 0.5kb upstream 0.5kb upstream 2841 true Chr1: 22212084-22214924 Arabidopsis thaliana
AT1G60230 0.5kb upstream 0.5kb upstream 500 false Chr1: 22214425-22214924 Arabidopsis thaliana
AT1G60230 0.5kb downstream 0.5kb downstream 2841 true Chr1: 22211584-22214424 Arabidopsis thaliana
AT1G60230 0.5kb downstream 0.5kb downstream 500 false Chr1: 22211584-22212083 Arabidopsis thaliana
AT1G60230 1.0kb upstream 1.0kb upstream 3341 true Chr1: 22212084-22215424 Arabidopsis thaliana
AT1G60230 1.0kb upstream 1.0kb upstream 1000 false Chr1: 22214425-22215424 Arabidopsis thaliana
AT1G60230 1.0kb downstream 1.0kb downstream 3341 true Chr1: 22211084-22214424 Arabidopsis thaliana
AT1G60230 1.0kb downstream 1.0kb downstream 1000 false Chr1: 22211084-22212083 Arabidopsis thaliana
AT1G60230 2.0kb upstream 2.0kb upstream 4341 true Chr1: 22212084-22216424 Arabidopsis thaliana
AT1G60230 2.0kb upstream 2.0kb upstream 2000 false Chr1: 22214425-22216424 Arabidopsis thaliana
AT1G60230 2.0kb downstream 2.0kb downstream 4341 true Chr1: 22210084-22214424 Arabidopsis thaliana
AT1G60230 2.0kb downstream 2.0kb downstream 2000 false Chr1: 22210084-22212083 Arabidopsis thaliana
AT1G60230 5.0kb upstream 5.0kb upstream 7341 true Chr1: 22212084-22219424 Arabidopsis thaliana
AT1G60230 5.0kb upstream 5.0kb upstream 5000 false Chr1: 22214425-22219424 Arabidopsis thaliana
AT1G60230 5.0kb downstream 5.0kb downstream 7341 true Chr1: 22207084-22214424 Arabidopsis thaliana
AT1G60230 5.0kb downstream 5.0kb downstream 5000 false Chr1: 22207084-22212083 Arabidopsis thaliana
AT1G60230 10.0kb upstream 10.0kb upstream 12341 true Chr1: 22212084-22224424 Arabidopsis thaliana
AT1G60230 10.0kb upstream 10.0kb upstream 10000 false Chr1: 22214425-22224424 Arabidopsis thaliana
AT1G60230 10.0kb downstream 10.0kb downstream 12341 true Chr1: 22202084-22214424 Arabidopsis thaliana
AT1G60230 10.0kb downstream 10.0kb downstream 10000 false Chr1: 22202084-22212083 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368512 5261 Brassicaceae View MSA
123834635 5264 Brassicales-Malvales View MSA
124340315 5266 SBM View MSA
124241965 5268 Malvidae View MSA
124065414 5270 Rosid View MSA
123740690 5271 Pentapetalae View MSA
122787851 5272 Eudicot View MSA
122043195 5273 Angiosperm View MSA
123429187 5275 Viridiplantae View MSA
121346291 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.963       High
cufflinks 6.04        
cufflinks 10.734       High
cufflinks 5.983        
cufflinks 7.967        
cufflinks 5.417       Low

0 Strain