Gene : AT1G57620 A. thaliana TAIR10
Defline:  (1 of 3) PTHR22811//PTHR22811:SF68 - TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN // SUBFAMILY NOT NAMED Genomic Order:  4748
Name:  ? AT1G57620 Secondary Identifier:  ? PAC:19655968
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G57620 0.5kb upstream 0.5kb upstream 2584 true Chr1: 21342221-21344804 Arabidopsis thaliana
AT1G57620 0.5kb upstream 0.5kb upstream 500 false Chr1: 21342221-21342720 Arabidopsis thaliana
AT1G57620 0.5kb downstream 0.5kb downstream 2584 true Chr1: 21342721-21345304 Arabidopsis thaliana
AT1G57620 0.5kb downstream 0.5kb downstream 500 false Chr1: 21344805-21345304 Arabidopsis thaliana
AT1G57620 1.0kb upstream 1.0kb upstream 3084 true Chr1: 21341721-21344804 Arabidopsis thaliana
AT1G57620 1.0kb upstream 1.0kb upstream 1000 false Chr1: 21341721-21342720 Arabidopsis thaliana
AT1G57620 1.0kb downstream 1.0kb downstream 3084 true Chr1: 21342721-21345804 Arabidopsis thaliana
AT1G57620 1.0kb downstream 1.0kb downstream 1000 false Chr1: 21344805-21345804 Arabidopsis thaliana
AT1G57620 2.0kb upstream 2.0kb upstream 4084 true Chr1: 21340721-21344804 Arabidopsis thaliana
AT1G57620 2.0kb upstream 2.0kb upstream 2000 false Chr1: 21340721-21342720 Arabidopsis thaliana
AT1G57620 2.0kb downstream 2.0kb downstream 4084 true Chr1: 21342721-21346804 Arabidopsis thaliana
AT1G57620 2.0kb downstream 2.0kb downstream 2000 false Chr1: 21344805-21346804 Arabidopsis thaliana
AT1G57620 5.0kb upstream 5.0kb upstream 7084 true Chr1: 21337721-21344804 Arabidopsis thaliana
AT1G57620 5.0kb upstream 5.0kb upstream 5000 false Chr1: 21337721-21342720 Arabidopsis thaliana
AT1G57620 5.0kb downstream 5.0kb downstream 7084 true Chr1: 21342721-21349804 Arabidopsis thaliana
AT1G57620 5.0kb downstream 5.0kb downstream 5000 false Chr1: 21344805-21349804 Arabidopsis thaliana
AT1G57620 10.0kb upstream 10.0kb upstream 12084 true Chr1: 21332721-21344804 Arabidopsis thaliana
AT1G57620 10.0kb upstream 10.0kb upstream 10000 false Chr1: 21332721-21342720 Arabidopsis thaliana
AT1G57620 10.0kb downstream 10.0kb downstream 12084 true Chr1: 21342721-21354804 Arabidopsis thaliana
AT1G57620 10.0kb downstream 10.0kb downstream 10000 false Chr1: 21344805-21354804 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377051 5261 Brassicaceae View MSA
123801426 5264 Brassicales-Malvales View MSA
124349960 5266 SBM View MSA
124245233 5268 Malvidae View MSA
124065325 5270 Rosid View MSA
123743210 5271 Pentapetalae View MSA
122786619 5272 Eudicot View MSA
122045643 5273 Angiosperm View MSA
121349336 5274 Embryophyte View MSA
123428181 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.014        
cufflinks 17.745        
cufflinks 7.464       Low
cufflinks 17.863        
cufflinks 7.148       Low
cufflinks 18.039        

0 Strain