Gene : HVA22C A. thaliana TAIR10
Primary Identifier:  ? AT1G69700 Defline:  (1 of 1) PTHR12300//PTHR12300:SF51 - HVA22-LIKE PROTEINS // HVA22-LIKE PROTEIN C
Genomic Order:  5927 Name:  ? AT1G69700
Secondary Identifier:  ? PAC:19650498
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G69700 0.5kb upstream 0.5kb upstream 2088 true Chr1: 26219738-26221825 Arabidopsis thaliana
AT1G69700 0.5kb upstream 0.5kb upstream 500 false Chr1: 26219738-26220237 Arabidopsis thaliana
AT1G69700 0.5kb downstream 0.5kb downstream 2088 true Chr1: 26220238-26222325 Arabidopsis thaliana
AT1G69700 0.5kb downstream 0.5kb downstream 500 false Chr1: 26221826-26222325 Arabidopsis thaliana
AT1G69700 1.0kb upstream 1.0kb upstream 2588 true Chr1: 26219238-26221825 Arabidopsis thaliana
AT1G69700 1.0kb upstream 1.0kb upstream 1000 false Chr1: 26219238-26220237 Arabidopsis thaliana
AT1G69700 1.0kb downstream 1.0kb downstream 2588 true Chr1: 26220238-26222825 Arabidopsis thaliana
AT1G69700 1.0kb downstream 1.0kb downstream 1000 false Chr1: 26221826-26222825 Arabidopsis thaliana
AT1G69700 2.0kb upstream 2.0kb upstream 3588 true Chr1: 26218238-26221825 Arabidopsis thaliana
AT1G69700 2.0kb upstream 2.0kb upstream 2000 false Chr1: 26218238-26220237 Arabidopsis thaliana
AT1G69700 2.0kb downstream 2.0kb downstream 3588 true Chr1: 26220238-26223825 Arabidopsis thaliana
AT1G69700 2.0kb downstream 2.0kb downstream 2000 false Chr1: 26221826-26223825 Arabidopsis thaliana
AT1G69700 5.0kb upstream 5.0kb upstream 6588 true Chr1: 26215238-26221825 Arabidopsis thaliana
AT1G69700 5.0kb upstream 5.0kb upstream 5000 false Chr1: 26215238-26220237 Arabidopsis thaliana
AT1G69700 5.0kb downstream 5.0kb downstream 6588 true Chr1: 26220238-26226825 Arabidopsis thaliana
AT1G69700 5.0kb downstream 5.0kb downstream 5000 false Chr1: 26221826-26226825 Arabidopsis thaliana
AT1G69700 10.0kb upstream 10.0kb upstream 11588 true Chr1: 26210238-26221825 Arabidopsis thaliana
AT1G69700 10.0kb upstream 10.0kb upstream 10000 false Chr1: 26210238-26220237 Arabidopsis thaliana
AT1G69700 10.0kb downstream 10.0kb downstream 11588 true Chr1: 26220238-26231825 Arabidopsis thaliana
AT1G69700 10.0kb downstream 10.0kb downstream 10000 false Chr1: 26221826-26231825 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373604 5261 Brassicaceae View MSA
123835000 5264 Brassicales-Malvales View MSA
124348158 5266 SBM View MSA
124244306 5268 Malvidae View MSA
124069874 5270 Rosid View MSA
123753411 5271 Pentapetalae View MSA
122797924 5272 Eudicot View MSA
122050358 5273 Angiosperm View MSA
121349779 5274 Embryophyte View MSA
123427624 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.138        
cufflinks 31.105     High  
cufflinks 9.64        
cufflinks 29.197        
cufflinks 8.09       Low
cufflinks 31.128     High  

0 Strain