Gene : ABA4 A. thaliana TAIR10
Primary Identifier:  ? AT1G67080 Defline:  (1 of 1) 5.3.99.9 - Neoxanthin synthase / NSY
Genomic Order:  5646 Name:  ? AT1G67080
Secondary Identifier:  ? PAC:19656714
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-6809 Arabidopsis thaliana pathologic  
Athaliana PWY-695 Arabidopsis thaliana pathologic  

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G67080 0.5kb upstream 0.5kb upstream 2136 true Chr1: 25045225-25047360 Arabidopsis thaliana
AT1G67080 0.5kb upstream 0.5kb upstream 500 false Chr1: 25046861-25047360 Arabidopsis thaliana
AT1G67080 0.5kb downstream 0.5kb downstream 2136 true Chr1: 25044725-25046860 Arabidopsis thaliana
AT1G67080 0.5kb downstream 0.5kb downstream 500 false Chr1: 25044725-25045224 Arabidopsis thaliana
AT1G67080 1.0kb upstream 1.0kb upstream 2636 true Chr1: 25045225-25047860 Arabidopsis thaliana
AT1G67080 1.0kb upstream 1.0kb upstream 1000 false Chr1: 25046861-25047860 Arabidopsis thaliana
AT1G67080 1.0kb downstream 1.0kb downstream 2636 true Chr1: 25044225-25046860 Arabidopsis thaliana
AT1G67080 1.0kb downstream 1.0kb downstream 1000 false Chr1: 25044225-25045224 Arabidopsis thaliana
AT1G67080 2.0kb upstream 2.0kb upstream 3636 true Chr1: 25045225-25048860 Arabidopsis thaliana
AT1G67080 2.0kb upstream 2.0kb upstream 2000 false Chr1: 25046861-25048860 Arabidopsis thaliana
AT1G67080 2.0kb downstream 2.0kb downstream 3636 true Chr1: 25043225-25046860 Arabidopsis thaliana
AT1G67080 2.0kb downstream 2.0kb downstream 2000 false Chr1: 25043225-25045224 Arabidopsis thaliana
AT1G67080 5.0kb upstream 5.0kb upstream 6636 true Chr1: 25045225-25051860 Arabidopsis thaliana
AT1G67080 5.0kb upstream 5.0kb upstream 5000 false Chr1: 25046861-25051860 Arabidopsis thaliana
AT1G67080 5.0kb downstream 5.0kb downstream 6636 true Chr1: 25040225-25046860 Arabidopsis thaliana
AT1G67080 5.0kb downstream 5.0kb downstream 5000 false Chr1: 25040225-25045224 Arabidopsis thaliana
AT1G67080 10.0kb upstream 10.0kb upstream 11636 true Chr1: 25045225-25056860 Arabidopsis thaliana
AT1G67080 10.0kb upstream 10.0kb upstream 10000 false Chr1: 25046861-25056860 Arabidopsis thaliana
AT1G67080 10.0kb downstream 10.0kb downstream 11636 true Chr1: 25035225-25046860 Arabidopsis thaliana
AT1G67080 10.0kb downstream 10.0kb downstream 10000 false Chr1: 25035225-25045224 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362178 5261 Brassicaceae View MSA
123832925 5264 Brassicales-Malvales View MSA
124339377 5266 SBM View MSA
124248470 5268 Malvidae View MSA
124062178 5270 Rosid View MSA
123748588 5271 Pentapetalae View MSA
122790006 5272 Eudicot View MSA
122047205 5273 Angiosperm View MSA
121346000 5274 Embryophyte View MSA
123425892 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.993        
cufflinks 16.035        
cufflinks 21.622       High
cufflinks 18.295        
cufflinks 18.19        
cufflinks 12.427       Low

0 Strain