Gene : AGO4 A. thaliana TAIR10
Primary Identifier:  ? AT2G27040 Defline:  (1 of 3) PTHR22891//PTHR22891:SF20 - EUKARYOTIC TRANSLATION INITIATION FACTOR 2C // PROTEIN ARGONAUTE 4-RELATED
Genomic Order:  1985 Name:  ? AT2G27040
Secondary Identifier:  ? PAC:19642741
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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G27040 0.5kb upstream 0.5kb upstream 6324 true Chr2: 11536534-11542857 Arabidopsis thaliana
AT2G27040 0.5kb upstream 0.5kb upstream 500 false Chr2: 11542358-11542857 Arabidopsis thaliana
AT2G27040 0.5kb downstream 0.5kb downstream 6324 true Chr2: 11536034-11542357 Arabidopsis thaliana
AT2G27040 0.5kb downstream 0.5kb downstream 500 false Chr2: 11536034-11536533 Arabidopsis thaliana
AT2G27040 1.0kb upstream 1.0kb upstream 6824 true Chr2: 11536534-11543357 Arabidopsis thaliana
AT2G27040 1.0kb upstream 1.0kb upstream 1000 false Chr2: 11542358-11543357 Arabidopsis thaliana
AT2G27040 1.0kb downstream 1.0kb downstream 6824 true Chr2: 11535534-11542357 Arabidopsis thaliana
AT2G27040 1.0kb downstream 1.0kb downstream 1000 false Chr2: 11535534-11536533 Arabidopsis thaliana
AT2G27040 2.0kb upstream 2.0kb upstream 7824 true Chr2: 11536534-11544357 Arabidopsis thaliana
AT2G27040 2.0kb upstream 2.0kb upstream 2000 false Chr2: 11542358-11544357 Arabidopsis thaliana
AT2G27040 2.0kb downstream 2.0kb downstream 7824 true Chr2: 11534534-11542357 Arabidopsis thaliana
AT2G27040 2.0kb downstream 2.0kb downstream 2000 false Chr2: 11534534-11536533 Arabidopsis thaliana
AT2G27040 5.0kb upstream 5.0kb upstream 10824 true Chr2: 11536534-11547357 Arabidopsis thaliana
AT2G27040 5.0kb upstream 5.0kb upstream 5000 false Chr2: 11542358-11547357 Arabidopsis thaliana
AT2G27040 5.0kb downstream 5.0kb downstream 10824 true Chr2: 11531534-11542357 Arabidopsis thaliana
AT2G27040 5.0kb downstream 5.0kb downstream 5000 false Chr2: 11531534-11536533 Arabidopsis thaliana
AT2G27040 10.0kb upstream 10.0kb upstream 15824 true Chr2: 11536534-11552357 Arabidopsis thaliana
AT2G27040 10.0kb upstream 10.0kb upstream 10000 false Chr2: 11542358-11552357 Arabidopsis thaliana
AT2G27040 10.0kb downstream 10.0kb downstream 15824 true Chr2: 11526534-11542357 Arabidopsis thaliana
AT2G27040 10.0kb downstream 10.0kb downstream 10000 false Chr2: 11526534-11536533 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360693 5261 Brassicaceae View MSA
123833668 5264 Brassicales-Malvales View MSA
124339571 5266 SBM View MSA
124239997 5268 Malvidae View MSA
124060995 5270 Rosid View MSA
123750944 5271 Pentapetalae View MSA
122796647 5272 Eudicot View MSA
122050518 5273 Angiosperm View MSA
121349761 5274 Embryophyte View MSA
123381432 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.467        
cufflinks 7.801        
cufflinks 2.598        
cufflinks 8.648        
cufflinks 2.311       Low
cufflinks 10.873       High

0 Strain