Gene : COL3 A. thaliana TAIR10
Primary Identifier:  ? AT2G24790 Defline:  (1 of 2) PTHR31319//PTHR31319:SF4 - FAMILY NOT NAMED // ZINC FINGER PROTEIN CONSTANS-LIKE 3-RELATED
Genomic Order:  1751 Name:  ? AT2G24790
Secondary Identifier:  ? PAC:19642809
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G24790 0.5kb upstream 0.5kb upstream 1748 true Chr2: 10566398-10568145 Arabidopsis thaliana
AT2G24790 0.5kb upstream 0.5kb upstream 500 false Chr2: 10566398-10566897 Arabidopsis thaliana
AT2G24790 0.5kb downstream 0.5kb downstream 1748 true Chr2: 10566898-10568645 Arabidopsis thaliana
AT2G24790 0.5kb downstream 0.5kb downstream 500 false Chr2: 10568146-10568645 Arabidopsis thaliana
AT2G24790 1.0kb upstream 1.0kb upstream 2248 true Chr2: 10565898-10568145 Arabidopsis thaliana
AT2G24790 1.0kb upstream 1.0kb upstream 1000 false Chr2: 10565898-10566897 Arabidopsis thaliana
AT2G24790 1.0kb downstream 1.0kb downstream 2248 true Chr2: 10566898-10569145 Arabidopsis thaliana
AT2G24790 1.0kb downstream 1.0kb downstream 1000 false Chr2: 10568146-10569145 Arabidopsis thaliana
AT2G24790 2.0kb upstream 2.0kb upstream 3248 true Chr2: 10564898-10568145 Arabidopsis thaliana
AT2G24790 2.0kb upstream 2.0kb upstream 2000 false Chr2: 10564898-10566897 Arabidopsis thaliana
AT2G24790 2.0kb downstream 2.0kb downstream 3248 true Chr2: 10566898-10570145 Arabidopsis thaliana
AT2G24790 2.0kb downstream 2.0kb downstream 2000 false Chr2: 10568146-10570145 Arabidopsis thaliana
AT2G24790 5.0kb upstream 5.0kb upstream 6248 true Chr2: 10561898-10568145 Arabidopsis thaliana
AT2G24790 5.0kb upstream 5.0kb upstream 5000 false Chr2: 10561898-10566897 Arabidopsis thaliana
AT2G24790 5.0kb downstream 5.0kb downstream 6248 true Chr2: 10566898-10573145 Arabidopsis thaliana
AT2G24790 5.0kb downstream 5.0kb downstream 5000 false Chr2: 10568146-10573145 Arabidopsis thaliana
AT2G24790 10.0kb upstream 10.0kb upstream 11248 true Chr2: 10556898-10568145 Arabidopsis thaliana
AT2G24790 10.0kb upstream 10.0kb upstream 10000 false Chr2: 10556898-10566897 Arabidopsis thaliana
AT2G24790 10.0kb downstream 10.0kb downstream 11248 true Chr2: 10566898-10578145 Arabidopsis thaliana
AT2G24790 10.0kb downstream 10.0kb downstream 10000 false Chr2: 10568146-10578145 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370504 5261 Brassicaceae View MSA
123841359 5264 Brassicales-Malvales View MSA
124345189 5266 SBM View MSA
124237552 5268 Malvidae View MSA
124065219 5270 Rosid View MSA
123752107 5271 Pentapetalae View MSA
122792098 5272 Eudicot View MSA
122049836 5273 Angiosperm View MSA
123428935 5275 Viridiplantae View MSA
121345556 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 111.286     High High
cufflinks 34.746     High  
cufflinks 84.412     High  
cufflinks 31.49     High  
cufflinks 85.898     High  
cufflinks 32.447     High  

0 Strain