Gene : AT2G22400 A. thaliana TAIR10
Defline:  (1 of 1) K15334 - multisite-specific tRNA:(cytosine-C5)-methyltransferase [EC:2.1.1.202] (NCL1, TRM4) Genomic Order:  1498
Name:  ? AT2G22400 Secondary Identifier:  ? PAC:19639278
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-6829 Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G22400 0.5kb upstream 0.5kb upstream 4717 true Chr2: 9504659-9509375 Arabidopsis thaliana
AT2G22400 0.5kb upstream 0.5kb upstream 500 false Chr2: 9508876-9509375 Arabidopsis thaliana
AT2G22400 0.5kb downstream 0.5kb downstream 4717 true Chr2: 9504159-9508875 Arabidopsis thaliana
AT2G22400 0.5kb downstream 0.5kb downstream 500 false Chr2: 9504159-9504658 Arabidopsis thaliana
AT2G22400 1.0kb upstream 1.0kb upstream 5217 true Chr2: 9504659-9509875 Arabidopsis thaliana
AT2G22400 1.0kb upstream 1.0kb upstream 1000 false Chr2: 9508876-9509875 Arabidopsis thaliana
AT2G22400 1.0kb downstream 1.0kb downstream 5217 true Chr2: 9503659-9508875 Arabidopsis thaliana
AT2G22400 1.0kb downstream 1.0kb downstream 1000 false Chr2: 9503659-9504658 Arabidopsis thaliana
AT2G22400 2.0kb upstream 2.0kb upstream 6217 true Chr2: 9504659-9510875 Arabidopsis thaliana
AT2G22400 2.0kb upstream 2.0kb upstream 2000 false Chr2: 9508876-9510875 Arabidopsis thaliana
AT2G22400 2.0kb downstream 2.0kb downstream 6217 true Chr2: 9502659-9508875 Arabidopsis thaliana
AT2G22400 2.0kb downstream 2.0kb downstream 2000 false Chr2: 9502659-9504658 Arabidopsis thaliana
AT2G22400 5.0kb upstream 5.0kb upstream 9217 true Chr2: 9504659-9513875 Arabidopsis thaliana
AT2G22400 5.0kb upstream 5.0kb upstream 5000 false Chr2: 9508876-9513875 Arabidopsis thaliana
AT2G22400 5.0kb downstream 5.0kb downstream 9217 true Chr2: 9499659-9508875 Arabidopsis thaliana
AT2G22400 5.0kb downstream 5.0kb downstream 5000 false Chr2: 9499659-9504658 Arabidopsis thaliana
AT2G22400 10.0kb upstream 10.0kb upstream 14217 true Chr2: 9504659-9518875 Arabidopsis thaliana
AT2G22400 10.0kb upstream 10.0kb upstream 10000 false Chr2: 9508876-9518875 Arabidopsis thaliana
AT2G22400 10.0kb downstream 10.0kb downstream 14217 true Chr2: 9494659-9508875 Arabidopsis thaliana
AT2G22400 10.0kb downstream 10.0kb downstream 10000 false Chr2: 9494659-9504658 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363512 5261 Brassicaceae View MSA
123834871 5264 Brassicales-Malvales View MSA
124341938 5266 SBM View MSA
124238434 5268 Malvidae View MSA
124062723 5270 Rosid View MSA
123742505 5271 Pentapetalae View MSA
122793605 5272 Eudicot View MSA
122043899 5273 Angiosperm View MSA
121349940 5274 Embryophyte View MSA
123426394 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 17.06       Low
cufflinks 22.745        
cufflinks 17.089       Low
cufflinks 23.443       High
cufflinks 18.468        
cufflinks 22.392        

0 Strain