Gene : HSI2 A. thaliana TAIR10
Primary Identifier:  ? AT2G30470 Defline:  (1 of 2) PTHR23336//PTHR23336:SF10 - ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3. // B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1-RELATED
Genomic Order:  2339 Name:  ? AT2G30470
Secondary Identifier:  ? PAC:19638455
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G30470 0.5kb upstream 0.5kb upstream 5037 true Chr2: 12980507-12985543 Arabidopsis thaliana
AT2G30470 0.5kb upstream 0.5kb upstream 500 false Chr2: 12985044-12985543 Arabidopsis thaliana
AT2G30470 0.5kb downstream 0.5kb downstream 5037 true Chr2: 12980007-12985043 Arabidopsis thaliana
AT2G30470 0.5kb downstream 0.5kb downstream 500 false Chr2: 12980007-12980506 Arabidopsis thaliana
AT2G30470 1.0kb upstream 1.0kb upstream 5537 true Chr2: 12980507-12986043 Arabidopsis thaliana
AT2G30470 1.0kb upstream 1.0kb upstream 1000 false Chr2: 12985044-12986043 Arabidopsis thaliana
AT2G30470 1.0kb downstream 1.0kb downstream 5537 true Chr2: 12979507-12985043 Arabidopsis thaliana
AT2G30470 1.0kb downstream 1.0kb downstream 1000 false Chr2: 12979507-12980506 Arabidopsis thaliana
AT2G30470 2.0kb upstream 2.0kb upstream 6537 true Chr2: 12980507-12987043 Arabidopsis thaliana
AT2G30470 2.0kb upstream 2.0kb upstream 2000 false Chr2: 12985044-12987043 Arabidopsis thaliana
AT2G30470 2.0kb downstream 2.0kb downstream 6537 true Chr2: 12978507-12985043 Arabidopsis thaliana
AT2G30470 2.0kb downstream 2.0kb downstream 2000 false Chr2: 12978507-12980506 Arabidopsis thaliana
AT2G30470 5.0kb upstream 5.0kb upstream 9537 true Chr2: 12980507-12990043 Arabidopsis thaliana
AT2G30470 5.0kb upstream 5.0kb upstream 5000 false Chr2: 12985044-12990043 Arabidopsis thaliana
AT2G30470 5.0kb downstream 5.0kb downstream 9537 true Chr2: 12975507-12985043 Arabidopsis thaliana
AT2G30470 5.0kb downstream 5.0kb downstream 5000 false Chr2: 12975507-12980506 Arabidopsis thaliana
AT2G30470 10.0kb upstream 10.0kb upstream 14537 true Chr2: 12980507-12995043 Arabidopsis thaliana
AT2G30470 10.0kb upstream 10.0kb upstream 10000 false Chr2: 12985044-12995043 Arabidopsis thaliana
AT2G30470 10.0kb downstream 10.0kb downstream 14537 true Chr2: 12970507-12985043 Arabidopsis thaliana
AT2G30470 10.0kb downstream 10.0kb downstream 10000 false Chr2: 12970507-12980506 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363159 5261 Brassicaceae View MSA
123830975 5264 Brassicales-Malvales View MSA
124339892 5266 SBM View MSA
124251846 5268 Malvidae View MSA
124062028 5270 Rosid View MSA
123749673 5271 Pentapetalae View MSA
122797219 5272 Eudicot View MSA
122049123 5273 Angiosperm View MSA
121350931 5274 Embryophyte View MSA
123428387 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.386       Low
cufflinks 7.649        
cufflinks 7.077        
cufflinks 8.678       High
cufflinks 7.404        
cufflinks 7.843        

0 Strain