Gene : SYTA A. thaliana TAIR10
Primary Identifier:  ? AT2G20990 Defline:  (1 of 4) PTHR10774:SF50 - SYNAPTOTAGMIN-1-RELATED
Genomic Order:  1356 Name:  ? AT2G20990
Secondary Identifier:  ? PAC:19642670
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Genomics

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Expression

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5 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G20990 0.5kb upstream 0.5kb upstream 4046 true Chr2: 9014052-9018097 Arabidopsis thaliana
AT2G20990 0.5kb upstream 0.5kb upstream 500 false Chr2: 9014052-9014551 Arabidopsis thaliana
AT2G20990 0.5kb downstream 0.5kb downstream 4046 true Chr2: 9014552-9018597 Arabidopsis thaliana
AT2G20990 0.5kb downstream 0.5kb downstream 500 false Chr2: 9018098-9018597 Arabidopsis thaliana
AT2G20990 1.0kb upstream 1.0kb upstream 4546 true Chr2: 9013552-9018097 Arabidopsis thaliana
AT2G20990 1.0kb upstream 1.0kb upstream 1000 false Chr2: 9013552-9014551 Arabidopsis thaliana
AT2G20990 1.0kb downstream 1.0kb downstream 4546 true Chr2: 9014552-9019097 Arabidopsis thaliana
AT2G20990 1.0kb downstream 1.0kb downstream 1000 false Chr2: 9018098-9019097 Arabidopsis thaliana
AT2G20990 2.0kb upstream 2.0kb upstream 5546 true Chr2: 9012552-9018097 Arabidopsis thaliana
AT2G20990 2.0kb upstream 2.0kb upstream 2000 false Chr2: 9012552-9014551 Arabidopsis thaliana
AT2G20990 2.0kb downstream 2.0kb downstream 5546 true Chr2: 9014552-9020097 Arabidopsis thaliana
AT2G20990 2.0kb downstream 2.0kb downstream 2000 false Chr2: 9018098-9020097 Arabidopsis thaliana
AT2G20990 5.0kb upstream 5.0kb upstream 8546 true Chr2: 9009552-9018097 Arabidopsis thaliana
AT2G20990 5.0kb upstream 5.0kb upstream 5000 false Chr2: 9009552-9014551 Arabidopsis thaliana
AT2G20990 5.0kb downstream 5.0kb downstream 8546 true Chr2: 9014552-9023097 Arabidopsis thaliana
AT2G20990 5.0kb downstream 5.0kb downstream 5000 false Chr2: 9018098-9023097 Arabidopsis thaliana
AT2G20990 10.0kb upstream 10.0kb upstream 13546 true Chr2: 9004552-9018097 Arabidopsis thaliana
AT2G20990 10.0kb upstream 10.0kb upstream 10000 false Chr2: 9004552-9014551 Arabidopsis thaliana
AT2G20990 10.0kb downstream 10.0kb downstream 13546 true Chr2: 9014552-9028097 Arabidopsis thaliana
AT2G20990 10.0kb downstream 10.0kb downstream 10000 false Chr2: 9018098-9028097 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374088 5261 Brassicaceae View MSA
123829660 5264 Brassicales-Malvales View MSA
124350150 5266 SBM View MSA
124237503 5268 Malvidae View MSA
124069636 5270 Rosid View MSA
123744925 5271 Pentapetalae View MSA
122791810 5272 Eudicot View MSA
122043926 5273 Angiosperm View MSA
123429031 5275 Viridiplantae View MSA
121346982 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 27.071        
cufflinks 22.936        
cufflinks 32.313     High High
cufflinks 22.431       Low
cufflinks 31.584     High High
cufflinks 25.451        

0 Strain