Gene : RPN1A A. thaliana TAIR10
Primary Identifier:  ? AT2G20580 Defline:  (1 of 2) K03028 - 26S proteasome regulatory subunit N1 (PSMD2, RPN1)
Genomic Order:  1301 Name:  ? AT2G20580
Secondary Identifier:  ? PAC:19641906
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G20580 0.5kb upstream 0.5kb upstream 6378 true Chr2: 8858488-8864865 Arabidopsis thaliana
AT2G20580 0.5kb upstream 0.5kb upstream 500 false Chr2: 8858488-8858987 Arabidopsis thaliana
AT2G20580 0.5kb downstream 0.5kb downstream 6378 true Chr2: 8858988-8865365 Arabidopsis thaliana
AT2G20580 0.5kb downstream 0.5kb downstream 500 false Chr2: 8864866-8865365 Arabidopsis thaliana
AT2G20580 1.0kb upstream 1.0kb upstream 6878 true Chr2: 8857988-8864865 Arabidopsis thaliana
AT2G20580 1.0kb upstream 1.0kb upstream 1000 false Chr2: 8857988-8858987 Arabidopsis thaliana
AT2G20580 1.0kb downstream 1.0kb downstream 6878 true Chr2: 8858988-8865865 Arabidopsis thaliana
AT2G20580 1.0kb downstream 1.0kb downstream 1000 false Chr2: 8864866-8865865 Arabidopsis thaliana
AT2G20580 2.0kb upstream 2.0kb upstream 7878 true Chr2: 8856988-8864865 Arabidopsis thaliana
AT2G20580 2.0kb upstream 2.0kb upstream 2000 false Chr2: 8856988-8858987 Arabidopsis thaliana
AT2G20580 2.0kb downstream 2.0kb downstream 7878 true Chr2: 8858988-8866865 Arabidopsis thaliana
AT2G20580 2.0kb downstream 2.0kb downstream 2000 false Chr2: 8864866-8866865 Arabidopsis thaliana
AT2G20580 5.0kb upstream 5.0kb upstream 10878 true Chr2: 8853988-8864865 Arabidopsis thaliana
AT2G20580 5.0kb upstream 5.0kb upstream 5000 false Chr2: 8853988-8858987 Arabidopsis thaliana
AT2G20580 5.0kb downstream 5.0kb downstream 10878 true Chr2: 8858988-8869865 Arabidopsis thaliana
AT2G20580 5.0kb downstream 5.0kb downstream 5000 false Chr2: 8864866-8869865 Arabidopsis thaliana
AT2G20580 10.0kb upstream 10.0kb upstream 15878 true Chr2: 8848988-8864865 Arabidopsis thaliana
AT2G20580 10.0kb upstream 10.0kb upstream 10000 false Chr2: 8848988-8858987 Arabidopsis thaliana
AT2G20580 10.0kb downstream 10.0kb downstream 15878 true Chr2: 8858988-8874865 Arabidopsis thaliana
AT2G20580 10.0kb downstream 10.0kb downstream 10000 false Chr2: 8864866-8874865 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379635 5261 Brassicaceae View MSA
123827603 5264 Brassicales-Malvales View MSA
124341714 5266 SBM View MSA
124239194 5268 Malvidae View MSA
124062825 5270 Rosid View MSA
123743224 5271 Pentapetalae View MSA
122786983 5272 Eudicot View MSA
122042231 5273 Angiosperm View MSA
123428994 5275 Viridiplantae View MSA
121346933 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 26.013        
cufflinks 24.249        
cufflinks 22.075       Low
cufflinks 27.963        
cufflinks 24.859        
cufflinks 31.198     High High

0 Strain