Gene : AT2G17880 A. thaliana TAIR10
Defline:  (1 of 2) PTHR24078//PTHR24078:SF166 - DNAJ HOMOLOG SUBFAMILY C MEMBER // LD21896P Genomic Order:  1021
Name:  ? AT2G17880 Secondary Identifier:  ? PAC:19642277
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G17880 0.5kb upstream 0.5kb upstream 1470 true Chr2: 7766962-7768431 Arabidopsis thaliana
AT2G17880 0.5kb upstream 0.5kb upstream 500 false Chr2: 7767932-7768431 Arabidopsis thaliana
AT2G17880 0.5kb downstream 0.5kb downstream 1470 true Chr2: 7766462-7767931 Arabidopsis thaliana
AT2G17880 0.5kb downstream 0.5kb downstream 500 false Chr2: 7766462-7766961 Arabidopsis thaliana
AT2G17880 1.0kb upstream 1.0kb upstream 1970 true Chr2: 7766962-7768931 Arabidopsis thaliana
AT2G17880 1.0kb upstream 1.0kb upstream 1000 false Chr2: 7767932-7768931 Arabidopsis thaliana
AT2G17880 1.0kb downstream 1.0kb downstream 1970 true Chr2: 7765962-7767931 Arabidopsis thaliana
AT2G17880 1.0kb downstream 1.0kb downstream 1000 false Chr2: 7765962-7766961 Arabidopsis thaliana
AT2G17880 2.0kb upstream 2.0kb upstream 2970 true Chr2: 7766962-7769931 Arabidopsis thaliana
AT2G17880 2.0kb upstream 2.0kb upstream 2000 false Chr2: 7767932-7769931 Arabidopsis thaliana
AT2G17880 2.0kb downstream 2.0kb downstream 2970 true Chr2: 7764962-7767931 Arabidopsis thaliana
AT2G17880 2.0kb downstream 2.0kb downstream 2000 false Chr2: 7764962-7766961 Arabidopsis thaliana
AT2G17880 5.0kb upstream 5.0kb upstream 5970 true Chr2: 7766962-7772931 Arabidopsis thaliana
AT2G17880 5.0kb upstream 5.0kb upstream 5000 false Chr2: 7767932-7772931 Arabidopsis thaliana
AT2G17880 5.0kb downstream 5.0kb downstream 5970 true Chr2: 7761962-7767931 Arabidopsis thaliana
AT2G17880 5.0kb downstream 5.0kb downstream 5000 false Chr2: 7761962-7766961 Arabidopsis thaliana
AT2G17880 10.0kb upstream 10.0kb upstream 10970 true Chr2: 7766962-7777931 Arabidopsis thaliana
AT2G17880 10.0kb upstream 10.0kb upstream 10000 false Chr2: 7767932-7777931 Arabidopsis thaliana
AT2G17880 10.0kb downstream 10.0kb downstream 10970 true Chr2: 7756962-7767931 Arabidopsis thaliana
AT2G17880 10.0kb downstream 10.0kb downstream 10000 false Chr2: 7756962-7766961 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380355 5261 Brassicaceae View MSA
123831478 5264 Brassicales-Malvales View MSA
124347840 5266 SBM View MSA
124248906 5268 Malvidae View MSA
124071980 5270 Rosid View MSA
123753518 5271 Pentapetalae View MSA
122797813 5272 Eudicot View MSA
122049944 5273 Angiosperm View MSA
123429067 5275 Viridiplantae View MSA
121350989 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.412        
cufflinks 1.734       Low
cufflinks 14.578       High
cufflinks 2.293        
cufflinks 16.437       High
cufflinks 2.227        

0 Strain