Gene : GPDHC1 A. thaliana TAIR10
Primary Identifier:  ? AT2G41540 Defline:  (1 of 2) PTHR11728:SF17 - 6-PHOSPHOGLUCONATE DEHYDROGENASE-LIKE PROTEIN
Genomic Order:  3553 Name:  ? AT2G41540
Secondary Identifier:  ? PAC:19642543
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-6118 Arabidopsis thaliana pathologic  
Athaliana PWY-7411 Arabidopsis thaliana pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G41540 0.5kb upstream 0.5kb upstream 3310 true Chr2: 17325593-17328902 Arabidopsis thaliana
AT2G41540 0.5kb upstream 0.5kb upstream 500 false Chr2: 17325593-17326092 Arabidopsis thaliana
AT2G41540 0.5kb downstream 0.5kb downstream 3310 true Chr2: 17326093-17329402 Arabidopsis thaliana
AT2G41540 0.5kb downstream 0.5kb downstream 500 false Chr2: 17328903-17329402 Arabidopsis thaliana
AT2G41540 1.0kb upstream 1.0kb upstream 3810 true Chr2: 17325093-17328902 Arabidopsis thaliana
AT2G41540 1.0kb upstream 1.0kb upstream 1000 false Chr2: 17325093-17326092 Arabidopsis thaliana
AT2G41540 1.0kb downstream 1.0kb downstream 3810 true Chr2: 17326093-17329902 Arabidopsis thaliana
AT2G41540 1.0kb downstream 1.0kb downstream 1000 false Chr2: 17328903-17329902 Arabidopsis thaliana
AT2G41540 2.0kb upstream 2.0kb upstream 4810 true Chr2: 17324093-17328902 Arabidopsis thaliana
AT2G41540 2.0kb upstream 2.0kb upstream 2000 false Chr2: 17324093-17326092 Arabidopsis thaliana
AT2G41540 2.0kb downstream 2.0kb downstream 4810 true Chr2: 17326093-17330902 Arabidopsis thaliana
AT2G41540 2.0kb downstream 2.0kb downstream 2000 false Chr2: 17328903-17330902 Arabidopsis thaliana
AT2G41540 5.0kb upstream 5.0kb upstream 7810 true Chr2: 17321093-17328902 Arabidopsis thaliana
AT2G41540 5.0kb upstream 5.0kb upstream 5000 false Chr2: 17321093-17326092 Arabidopsis thaliana
AT2G41540 5.0kb downstream 5.0kb downstream 7810 true Chr2: 17326093-17333902 Arabidopsis thaliana
AT2G41540 5.0kb downstream 5.0kb downstream 5000 false Chr2: 17328903-17333902 Arabidopsis thaliana
AT2G41540 10.0kb upstream 10.0kb upstream 12810 true Chr2: 17316093-17328902 Arabidopsis thaliana
AT2G41540 10.0kb upstream 10.0kb upstream 10000 false Chr2: 17316093-17326092 Arabidopsis thaliana
AT2G41540 10.0kb downstream 10.0kb downstream 12810 true Chr2: 17326093-17338902 Arabidopsis thaliana
AT2G41540 10.0kb downstream 10.0kb downstream 10000 false Chr2: 17328903-17338902 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362539 5261 Brassicaceae View MSA
123840011 5264 Brassicales-Malvales View MSA
124343706 5266 SBM View MSA
124251382 5268 Malvidae View MSA
124069658 5270 Rosid View MSA
123738520 5271 Pentapetalae View MSA
122790520 5272 Eudicot View MSA
122046820 5273 Angiosperm View MSA
121349677 5274 Embryophyte View MSA
123381397 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.262        
cufflinks 4.302        
cufflinks 2.034        
cufflinks 5.385       High
cufflinks 1.63       Low
cufflinks 4.695        

0 Strain