Gene : AT2G41080 A. thaliana TAIR10
Defline:  (1 of 61) PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Genomic Order:  3499
Name:  ? AT2G41080 Secondary Identifier:  ? PAC:19641532
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G41080 0.5kb upstream 0.5kb upstream 2241 true Chr2: 17132353-17134593 Arabidopsis thaliana
AT2G41080 0.5kb upstream 0.5kb upstream 500 false Chr2: 17132353-17132852 Arabidopsis thaliana
AT2G41080 0.5kb downstream 0.5kb downstream 2241 true Chr2: 17132853-17135093 Arabidopsis thaliana
AT2G41080 0.5kb downstream 0.5kb downstream 500 false Chr2: 17134594-17135093 Arabidopsis thaliana
AT2G41080 1.0kb upstream 1.0kb upstream 2741 true Chr2: 17131853-17134593 Arabidopsis thaliana
AT2G41080 1.0kb upstream 1.0kb upstream 1000 false Chr2: 17131853-17132852 Arabidopsis thaliana
AT2G41080 1.0kb downstream 1.0kb downstream 2741 true Chr2: 17132853-17135593 Arabidopsis thaliana
AT2G41080 1.0kb downstream 1.0kb downstream 1000 false Chr2: 17134594-17135593 Arabidopsis thaliana
AT2G41080 2.0kb upstream 2.0kb upstream 3741 true Chr2: 17130853-17134593 Arabidopsis thaliana
AT2G41080 2.0kb upstream 2.0kb upstream 2000 false Chr2: 17130853-17132852 Arabidopsis thaliana
AT2G41080 2.0kb downstream 2.0kb downstream 3741 true Chr2: 17132853-17136593 Arabidopsis thaliana
AT2G41080 2.0kb downstream 2.0kb downstream 2000 false Chr2: 17134594-17136593 Arabidopsis thaliana
AT2G41080 5.0kb upstream 5.0kb upstream 6741 true Chr2: 17127853-17134593 Arabidopsis thaliana
AT2G41080 5.0kb upstream 5.0kb upstream 5000 false Chr2: 17127853-17132852 Arabidopsis thaliana
AT2G41080 5.0kb downstream 5.0kb downstream 6741 true Chr2: 17132853-17139593 Arabidopsis thaliana
AT2G41080 5.0kb downstream 5.0kb downstream 5000 false Chr2: 17134594-17139593 Arabidopsis thaliana
AT2G41080 10.0kb upstream 10.0kb upstream 11741 true Chr2: 17122853-17134593 Arabidopsis thaliana
AT2G41080 10.0kb upstream 10.0kb upstream 10000 false Chr2: 17122853-17132852 Arabidopsis thaliana
AT2G41080 10.0kb downstream 10.0kb downstream 11741 true Chr2: 17132853-17144593 Arabidopsis thaliana
AT2G41080 10.0kb downstream 10.0kb downstream 10000 false Chr2: 17134594-17144593 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026268 5273 Angiosperm View MSA
122371837 5261 Brassicaceae View MSA
123832566 5264 Brassicales-Malvales View MSA
124346075 5266 SBM View MSA
124238842 5268 Malvidae View MSA
124063254 5270 Rosid View MSA
123739998 5271 Pentapetalae View MSA
122787628 5272 Eudicot View MSA
121296253 5274 Embryophyte View MSA
123334450 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.857        
cufflinks 7.722        
cufflinks 4.865       Low
cufflinks 7.535        
cufflinks 4.344       Low
cufflinks 7.04        

0 Strain