Gene : AT2G48160 A. thaliana TAIR10
Defline:  (1 of 2) PTHR12550:SF5 - HUA2-LIKE PROTEIN 2-RELATED Genomic Order:  4245
Name:  ? AT2G48160 Secondary Identifier:  ? PAC:19640969
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G48160 0.5kb upstream 0.5kb upstream 7913 true Chr2: 19689409-19697321 Arabidopsis thaliana
AT2G48160 0.5kb upstream 0.5kb upstream 500 false Chr2: 19696822-19697321 Arabidopsis thaliana
AT2G48160 0.5kb downstream 0.5kb downstream 7913 true Chr2: 19688909-19696821 Arabidopsis thaliana
AT2G48160 0.5kb downstream 0.5kb downstream 500 false Chr2: 19688909-19689408 Arabidopsis thaliana
AT2G48160 1.0kb upstream 1.0kb upstream 8413 true Chr2: 19689409-19697821 Arabidopsis thaliana
AT2G48160 1.0kb upstream 1.0kb upstream 1000 false Chr2: 19696822-19697821 Arabidopsis thaliana
AT2G48160 1.0kb downstream 1.0kb downstream 8413 true Chr2: 19688409-19696821 Arabidopsis thaliana
AT2G48160 1.0kb downstream 1.0kb downstream 1000 false Chr2: 19688409-19689408 Arabidopsis thaliana
AT2G48160 2.0kb upstream 2.0kb upstream 8881 true Chr2: 19689409-19698289 Arabidopsis thaliana
AT2G48160 2.0kb upstream 2.0kb upstream 1468 false Chr2: 19696822-19698289 Arabidopsis thaliana
AT2G48160 2.0kb downstream 2.0kb downstream 9413 true Chr2: 19687409-19696821 Arabidopsis thaliana
AT2G48160 2.0kb downstream 2.0kb downstream 2000 false Chr2: 19687409-19689408 Arabidopsis thaliana
AT2G48160 5.0kb upstream 5.0kb upstream 8881 true Chr2: 19689409-19698289 Arabidopsis thaliana
AT2G48160 5.0kb upstream 5.0kb upstream 1468 false Chr2: 19696822-19698289 Arabidopsis thaliana
AT2G48160 5.0kb downstream 5.0kb downstream 12413 true Chr2: 19684409-19696821 Arabidopsis thaliana
AT2G48160 5.0kb downstream 5.0kb downstream 5000 false Chr2: 19684409-19689408 Arabidopsis thaliana
AT2G48160 10.0kb upstream 10.0kb upstream 8881 true Chr2: 19689409-19698289 Arabidopsis thaliana
AT2G48160 10.0kb upstream 10.0kb upstream 1468 false Chr2: 19696822-19698289 Arabidopsis thaliana
AT2G48160 10.0kb downstream 10.0kb downstream 17413 true Chr2: 19679409-19696821 Arabidopsis thaliana
AT2G48160 10.0kb downstream 10.0kb downstream 10000 false Chr2: 19679409-19689408 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377448 5261 Brassicaceae View MSA
123839388 5264 Brassicales-Malvales View MSA
124337608 5266 SBM View MSA
124240604 5268 Malvidae View MSA
124068925 5270 Rosid View MSA
123739923 5271 Pentapetalae View MSA
122787365 5272 Eudicot View MSA
122045981 5273 Angiosperm View MSA
121348471 5274 Embryophyte View MSA
123424079 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.456        
cufflinks 10.717        
cufflinks 11.245        
cufflinks 11.68       High
cufflinks 10.449       Low
cufflinks 11.272        

0 Strain