Gene : AT2G48100 A. thaliana TAIR10
Defline:  (1 of 1) PTHR12801:SF66 - EXONUCLEASE-LIKE PROTEIN Genomic Order:  4238
Name:  ? AT2G48100 Secondary Identifier:  ? PAC:19638330
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G48100 0.5kb upstream 0.5kb upstream 3292 true Chr2: 19670001-19673292 Arabidopsis thaliana
AT2G48100 0.5kb upstream 0.5kb upstream 500 false Chr2: 19670001-19670500 Arabidopsis thaliana
AT2G48100 0.5kb downstream 0.5kb downstream 3292 true Chr2: 19670501-19673792 Arabidopsis thaliana
AT2G48100 0.5kb downstream 0.5kb downstream 500 false Chr2: 19673293-19673792 Arabidopsis thaliana
AT2G48100 1.0kb upstream 1.0kb upstream 3792 true Chr2: 19669501-19673292 Arabidopsis thaliana
AT2G48100 1.0kb upstream 1.0kb upstream 1000 false Chr2: 19669501-19670500 Arabidopsis thaliana
AT2G48100 1.0kb downstream 1.0kb downstream 3792 true Chr2: 19670501-19674292 Arabidopsis thaliana
AT2G48100 1.0kb downstream 1.0kb downstream 1000 false Chr2: 19673293-19674292 Arabidopsis thaliana
AT2G48100 2.0kb upstream 2.0kb upstream 4792 true Chr2: 19668501-19673292 Arabidopsis thaliana
AT2G48100 2.0kb upstream 2.0kb upstream 2000 false Chr2: 19668501-19670500 Arabidopsis thaliana
AT2G48100 2.0kb downstream 2.0kb downstream 4792 true Chr2: 19670501-19675292 Arabidopsis thaliana
AT2G48100 2.0kb downstream 2.0kb downstream 2000 false Chr2: 19673293-19675292 Arabidopsis thaliana
AT2G48100 5.0kb upstream 5.0kb upstream 7792 true Chr2: 19665501-19673292 Arabidopsis thaliana
AT2G48100 5.0kb upstream 5.0kb upstream 5000 false Chr2: 19665501-19670500 Arabidopsis thaliana
AT2G48100 5.0kb downstream 5.0kb downstream 7792 true Chr2: 19670501-19678292 Arabidopsis thaliana
AT2G48100 5.0kb downstream 5.0kb downstream 5000 false Chr2: 19673293-19678292 Arabidopsis thaliana
AT2G48100 10.0kb upstream 10.0kb upstream 12792 true Chr2: 19660501-19673292 Arabidopsis thaliana
AT2G48100 10.0kb upstream 10.0kb upstream 10000 false Chr2: 19660501-19670500 Arabidopsis thaliana
AT2G48100 10.0kb downstream 10.0kb downstream 12792 true Chr2: 19670501-19683292 Arabidopsis thaliana
AT2G48100 10.0kb downstream 10.0kb downstream 10000 false Chr2: 19673293-19683292 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373040 5261 Brassicaceae View MSA
123830301 5264 Brassicales-Malvales View MSA
124348524 5266 SBM View MSA
124238671 5268 Malvidae View MSA
124069568 5270 Rosid View MSA
123750335 5271 Pentapetalae View MSA
122794102 5272 Eudicot View MSA
122048562 5273 Angiosperm View MSA
121349670 5274 Embryophyte View MSA
123428502 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.161       Low
cufflinks 4.874        
cufflinks 3.541        
cufflinks 6.121       High
cufflinks 3.617        
cufflinks 4.496        

0 Strain