Gene : AT2G32240 A. thaliana TAIR10
Defline:  (1 of 1) KOG0964//KOG0978 - Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) // E3 ubiquitin ligase involved in syntaxin degradation Genomic Order:  2537
Name:  ? AT2G32240 Secondary Identifier:  ? PAC:19639592
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G32240 0.5kb upstream 0.5kb upstream 7357 true Chr2: 13684299-13691655 Arabidopsis thaliana
AT2G32240 0.5kb upstream 0.5kb upstream 500 false Chr2: 13691156-13691655 Arabidopsis thaliana
AT2G32240 0.5kb downstream 0.5kb downstream 7357 true Chr2: 13683799-13691155 Arabidopsis thaliana
AT2G32240 0.5kb downstream 0.5kb downstream 500 false Chr2: 13683799-13684298 Arabidopsis thaliana
AT2G32240 1.0kb upstream 1.0kb upstream 7857 true Chr2: 13684299-13692155 Arabidopsis thaliana
AT2G32240 1.0kb upstream 1.0kb upstream 1000 false Chr2: 13691156-13692155 Arabidopsis thaliana
AT2G32240 1.0kb downstream 1.0kb downstream 7857 true Chr2: 13683299-13691155 Arabidopsis thaliana
AT2G32240 1.0kb downstream 1.0kb downstream 1000 false Chr2: 13683299-13684298 Arabidopsis thaliana
AT2G32240 2.0kb upstream 2.0kb upstream 8857 true Chr2: 13684299-13693155 Arabidopsis thaliana
AT2G32240 2.0kb upstream 2.0kb upstream 2000 false Chr2: 13691156-13693155 Arabidopsis thaliana
AT2G32240 2.0kb downstream 2.0kb downstream 8857 true Chr2: 13682299-13691155 Arabidopsis thaliana
AT2G32240 2.0kb downstream 2.0kb downstream 2000 false Chr2: 13682299-13684298 Arabidopsis thaliana
AT2G32240 5.0kb upstream 5.0kb upstream 11857 true Chr2: 13684299-13696155 Arabidopsis thaliana
AT2G32240 5.0kb upstream 5.0kb upstream 5000 false Chr2: 13691156-13696155 Arabidopsis thaliana
AT2G32240 5.0kb downstream 5.0kb downstream 11857 true Chr2: 13679299-13691155 Arabidopsis thaliana
AT2G32240 5.0kb downstream 5.0kb downstream 5000 false Chr2: 13679299-13684298 Arabidopsis thaliana
AT2G32240 10.0kb upstream 10.0kb upstream 16857 true Chr2: 13684299-13701155 Arabidopsis thaliana
AT2G32240 10.0kb upstream 10.0kb upstream 10000 false Chr2: 13691156-13701155 Arabidopsis thaliana
AT2G32240 10.0kb downstream 10.0kb downstream 16857 true Chr2: 13674299-13691155 Arabidopsis thaliana
AT2G32240 10.0kb downstream 10.0kb downstream 10000 false Chr2: 13674299-13684298 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368451 5261 Brassicaceae View MSA
123829449 5264 Brassicales-Malvales View MSA
124343010 5266 SBM View MSA
124252875 5268 Malvidae View MSA
124066558 5270 Rosid View MSA
123748298 5271 Pentapetalae View MSA
122786637 5272 Eudicot View MSA
122049779 5273 Angiosperm View MSA
121351769 5274 Embryophyte View MSA
123428094 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 22.521        
cufflinks 20.089        
cufflinks 13.49       Low
cufflinks 30.612     High High
cufflinks 14.715       Low
cufflinks 28.226        

0 Strain