Gene : AT2G38185 A. thaliana TAIR10
Defline:  (1 of 4) PTHR12183:SF16 - PROTEIN ABERRANT POLLEN DEVELOPMENT 1-RELATED Genomic Order:  3182
Name:  ? AT2G38185 Secondary Identifier:  ? PAC:19641020
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-7511 Arabidopsis thaliana pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G38185 0.5kb upstream 0.5kb upstream 3744 true Chr2: 15999426-16003169 Arabidopsis thaliana
AT2G38185 0.5kb upstream 0.5kb upstream 500 false Chr2: 15999426-15999925 Arabidopsis thaliana
AT2G38185 0.5kb downstream 0.5kb downstream 3744 true Chr2: 15999926-16003669 Arabidopsis thaliana
AT2G38185 0.5kb downstream 0.5kb downstream 500 false Chr2: 16003170-16003669 Arabidopsis thaliana
AT2G38185 1.0kb upstream 1.0kb upstream 4244 true Chr2: 15998926-16003169 Arabidopsis thaliana
AT2G38185 1.0kb upstream 1.0kb upstream 1000 false Chr2: 15998926-15999925 Arabidopsis thaliana
AT2G38185 1.0kb downstream 1.0kb downstream 4244 true Chr2: 15999926-16004169 Arabidopsis thaliana
AT2G38185 1.0kb downstream 1.0kb downstream 1000 false Chr2: 16003170-16004169 Arabidopsis thaliana
AT2G38185 2.0kb upstream 2.0kb upstream 5244 true Chr2: 15997926-16003169 Arabidopsis thaliana
AT2G38185 2.0kb upstream 2.0kb upstream 2000 false Chr2: 15997926-15999925 Arabidopsis thaliana
AT2G38185 2.0kb downstream 2.0kb downstream 5244 true Chr2: 15999926-16005169 Arabidopsis thaliana
AT2G38185 2.0kb downstream 2.0kb downstream 2000 false Chr2: 16003170-16005169 Arabidopsis thaliana
AT2G38185 5.0kb upstream 5.0kb upstream 8244 true Chr2: 15994926-16003169 Arabidopsis thaliana
AT2G38185 5.0kb upstream 5.0kb upstream 5000 false Chr2: 15994926-15999925 Arabidopsis thaliana
AT2G38185 5.0kb downstream 5.0kb downstream 8244 true Chr2: 15999926-16008169 Arabidopsis thaliana
AT2G38185 5.0kb downstream 5.0kb downstream 5000 false Chr2: 16003170-16008169 Arabidopsis thaliana
AT2G38185 10.0kb upstream 10.0kb upstream 13244 true Chr2: 15989926-16003169 Arabidopsis thaliana
AT2G38185 10.0kb upstream 10.0kb upstream 10000 false Chr2: 15989926-15999925 Arabidopsis thaliana
AT2G38185 10.0kb downstream 10.0kb downstream 13244 true Chr2: 15999926-16013169 Arabidopsis thaliana
AT2G38185 10.0kb downstream 10.0kb downstream 10000 false Chr2: 16003170-16013169 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122792833 5272 Eudicot View MSA
122376606 5261 Brassicaceae View MSA
123838874 5264 Brassicales-Malvales View MSA
124344193 5266 SBM View MSA
124250832 5268 Malvidae View MSA
124070780 5270 Rosid View MSA
123741557 5271 Pentapetalae View MSA
122042274 5273 Angiosperm View MSA
121349312 5274 Embryophyte View MSA
123381271 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.467        
cufflinks 0.518        
cufflinks 0.404        
cufflinks 0.541       High
cufflinks 0.411        
cufflinks 0.365       Low

0 Strain