Gene : AT2G30550 A. thaliana TAIR10
Defline:  (1 of 2) PTHR31403:SF7 - PHOSPHOLIPASE A1-IGAMMA1, CHLOROPLASTIC-RELATED Genomic Order:  2347
Name:  ? AT2G30550 Secondary Identifier:  ? PAC:19640924
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana LIPAS-PWY Arabidopsis thaliana pathologic  
Athaliana LIPASYN-PWY Arabidopsis thaliana pathologic  
Athaliana PWY-6803 Arabidopsis thaliana pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G30550 0.5kb upstream 0.5kb upstream 2806 true Chr2: 13014348-13017153 Arabidopsis thaliana
AT2G30550 0.5kb upstream 0.5kb upstream 500 false Chr2: 13014348-13014847 Arabidopsis thaliana
AT2G30550 0.5kb downstream 0.5kb downstream 2806 true Chr2: 13014848-13017653 Arabidopsis thaliana
AT2G30550 0.5kb downstream 0.5kb downstream 500 false Chr2: 13017154-13017653 Arabidopsis thaliana
AT2G30550 1.0kb upstream 1.0kb upstream 3306 true Chr2: 13013848-13017153 Arabidopsis thaliana
AT2G30550 1.0kb upstream 1.0kb upstream 1000 false Chr2: 13013848-13014847 Arabidopsis thaliana
AT2G30550 1.0kb downstream 1.0kb downstream 3306 true Chr2: 13014848-13018153 Arabidopsis thaliana
AT2G30550 1.0kb downstream 1.0kb downstream 1000 false Chr2: 13017154-13018153 Arabidopsis thaliana
AT2G30550 2.0kb upstream 2.0kb upstream 4306 true Chr2: 13012848-13017153 Arabidopsis thaliana
AT2G30550 2.0kb upstream 2.0kb upstream 2000 false Chr2: 13012848-13014847 Arabidopsis thaliana
AT2G30550 2.0kb downstream 2.0kb downstream 4306 true Chr2: 13014848-13019153 Arabidopsis thaliana
AT2G30550 2.0kb downstream 2.0kb downstream 2000 false Chr2: 13017154-13019153 Arabidopsis thaliana
AT2G30550 5.0kb upstream 5.0kb upstream 7306 true Chr2: 13009848-13017153 Arabidopsis thaliana
AT2G30550 5.0kb upstream 5.0kb upstream 5000 false Chr2: 13009848-13014847 Arabidopsis thaliana
AT2G30550 5.0kb downstream 5.0kb downstream 7306 true Chr2: 13014848-13022153 Arabidopsis thaliana
AT2G30550 5.0kb downstream 5.0kb downstream 5000 false Chr2: 13017154-13022153 Arabidopsis thaliana
AT2G30550 10.0kb upstream 10.0kb upstream 12306 true Chr2: 13004848-13017153 Arabidopsis thaliana
AT2G30550 10.0kb upstream 10.0kb upstream 10000 false Chr2: 13004848-13014847 Arabidopsis thaliana
AT2G30550 10.0kb downstream 10.0kb downstream 12306 true Chr2: 13014848-13027153 Arabidopsis thaliana
AT2G30550 10.0kb downstream 10.0kb downstream 10000 false Chr2: 13017154-13027153 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360921 5261 Brassicaceae View MSA
123837978 5264 Brassicales-Malvales View MSA
124340198 5266 SBM View MSA
124242894 5268 Malvidae View MSA
124070138 5270 Rosid View MSA
123750987 5271 Pentapetalae View MSA
122791980 5272 Eudicot View MSA
122045871 5273 Angiosperm View MSA
121350475 5274 Embryophyte View MSA
123428676 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.507       High
cufflinks 2.793       Low
cufflinks 6.003        
cufflinks 8.773        
cufflinks 12.273        
cufflinks 5.08        

0 Strain