Gene : PD1 A. thaliana TAIR10
Primary Identifier:  ? AT2G27820 Defline:  (1 of 4) 4.2.1.51//4.2.1.91 - Prephenate dehydratase // Arogenate dehydratase / Carboxycyclohexadienyl dehydratase
Genomic Order:  2069 Name:  ? AT2G27820
Secondary Identifier:  ? PAC:19641822
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-3462 Arabidopsis thaliana pathologic  
Athaliana PWY-3481 Arabidopsis thaliana pathologic  

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G27820 0.5kb upstream 0.5kb upstream 2021 true Chr2: 11856268-11858288 Arabidopsis thaliana
AT2G27820 0.5kb upstream 0.5kb upstream 500 false Chr2: 11856268-11856767 Arabidopsis thaliana
AT2G27820 0.5kb downstream 0.5kb downstream 2021 true Chr2: 11856768-11858788 Arabidopsis thaliana
AT2G27820 0.5kb downstream 0.5kb downstream 500 false Chr2: 11858289-11858788 Arabidopsis thaliana
AT2G27820 1.0kb upstream 1.0kb upstream 2521 true Chr2: 11855768-11858288 Arabidopsis thaliana
AT2G27820 1.0kb upstream 1.0kb upstream 1000 false Chr2: 11855768-11856767 Arabidopsis thaliana
AT2G27820 1.0kb downstream 1.0kb downstream 2521 true Chr2: 11856768-11859288 Arabidopsis thaliana
AT2G27820 1.0kb downstream 1.0kb downstream 1000 false Chr2: 11858289-11859288 Arabidopsis thaliana
AT2G27820 2.0kb upstream 2.0kb upstream 3521 true Chr2: 11854768-11858288 Arabidopsis thaliana
AT2G27820 2.0kb upstream 2.0kb upstream 2000 false Chr2: 11854768-11856767 Arabidopsis thaliana
AT2G27820 2.0kb downstream 2.0kb downstream 3521 true Chr2: 11856768-11860288 Arabidopsis thaliana
AT2G27820 2.0kb downstream 2.0kb downstream 2000 false Chr2: 11858289-11860288 Arabidopsis thaliana
AT2G27820 5.0kb upstream 5.0kb upstream 6521 true Chr2: 11851768-11858288 Arabidopsis thaliana
AT2G27820 5.0kb upstream 5.0kb upstream 5000 false Chr2: 11851768-11856767 Arabidopsis thaliana
AT2G27820 5.0kb downstream 5.0kb downstream 6521 true Chr2: 11856768-11863288 Arabidopsis thaliana
AT2G27820 5.0kb downstream 5.0kb downstream 5000 false Chr2: 11858289-11863288 Arabidopsis thaliana
AT2G27820 10.0kb upstream 10.0kb upstream 11521 true Chr2: 11846768-11858288 Arabidopsis thaliana
AT2G27820 10.0kb upstream 10.0kb upstream 10000 false Chr2: 11846768-11856767 Arabidopsis thaliana
AT2G27820 10.0kb downstream 10.0kb downstream 11521 true Chr2: 11856768-11868288 Arabidopsis thaliana
AT2G27820 10.0kb downstream 10.0kb downstream 10000 false Chr2: 11858289-11868288 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364103 5261 Brassicaceae View MSA
123837547 5264 Brassicales-Malvales View MSA
124336560 5266 SBM View MSA
124250436 5268 Malvidae View MSA
124066223 5270 Rosid View MSA
123745222 5271 Pentapetalae View MSA
122787752 5272 Eudicot View MSA
122046279 5273 Angiosperm View MSA
121351398 5274 Embryophyte View MSA
123427097 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.158        
cufflinks 9.885        
cufflinks 17.994       High
cufflinks 13.114        
cufflinks 18.693       High
cufflinks 11.059        

0 Strain