Sequence Feature Displayer
Ontology Annotation Displayer
2 Pathways
Pathway Identifier | Organism Name | Analysis Method | Analysis Status |
---|---|---|---|
Athaliana PWY-5885 | Arabidopsis thaliana | pathologic | |
Athaliana TRIGLSYN-PWY | Arabidopsis thaliana | pathologic |
Other
20 Flanking Regions
Region Name | Flank Size | Direction | Length | Gene Included? | Chromosome Location | Organism Name |
---|---|---|---|---|---|---|
AT2G38995 0.5kb upstream | 0.5kb | upstream | 3249 | true | Chr2: 16281620-16284868 | Arabidopsis thaliana |
AT2G38995 0.5kb upstream | 0.5kb | upstream | 500 | false | Chr2: 16281620-16282119 | Arabidopsis thaliana |
AT2G38995 0.5kb downstream | 0.5kb | downstream | 3249 | true | Chr2: 16282120-16285368 | Arabidopsis thaliana |
AT2G38995 0.5kb downstream | 0.5kb | downstream | 500 | false | Chr2: 16284869-16285368 | Arabidopsis thaliana |
AT2G38995 1.0kb upstream | 1.0kb | upstream | 3749 | true | Chr2: 16281120-16284868 | Arabidopsis thaliana |
AT2G38995 1.0kb upstream | 1.0kb | upstream | 1000 | false | Chr2: 16281120-16282119 | Arabidopsis thaliana |
AT2G38995 1.0kb downstream | 1.0kb | downstream | 3749 | true | Chr2: 16282120-16285868 | Arabidopsis thaliana |
AT2G38995 1.0kb downstream | 1.0kb | downstream | 1000 | false | Chr2: 16284869-16285868 | Arabidopsis thaliana |
AT2G38995 2.0kb upstream | 2.0kb | upstream | 4749 | true | Chr2: 16280120-16284868 | Arabidopsis thaliana |
AT2G38995 2.0kb upstream | 2.0kb | upstream | 2000 | false | Chr2: 16280120-16282119 | Arabidopsis thaliana |
AT2G38995 2.0kb downstream | 2.0kb | downstream | 4749 | true | Chr2: 16282120-16286868 | Arabidopsis thaliana |
AT2G38995 2.0kb downstream | 2.0kb | downstream | 2000 | false | Chr2: 16284869-16286868 | Arabidopsis thaliana |
AT2G38995 5.0kb upstream | 5.0kb | upstream | 7749 | true | Chr2: 16277120-16284868 | Arabidopsis thaliana |
AT2G38995 5.0kb upstream | 5.0kb | upstream | 5000 | false | Chr2: 16277120-16282119 | Arabidopsis thaliana |
AT2G38995 5.0kb downstream | 5.0kb | downstream | 7749 | true | Chr2: 16282120-16289868 | Arabidopsis thaliana |
AT2G38995 5.0kb downstream | 5.0kb | downstream | 5000 | false | Chr2: 16284869-16289868 | Arabidopsis thaliana |
AT2G38995 10.0kb upstream | 10.0kb | upstream | 12749 | true | Chr2: 16272120-16284868 | Arabidopsis thaliana |
AT2G38995 10.0kb upstream | 10.0kb | upstream | 10000 | false | Chr2: 16272120-16282119 | Arabidopsis thaliana |
AT2G38995 10.0kb downstream | 10.0kb | downstream | 12749 | true | Chr2: 16282120-16294868 | Arabidopsis thaliana |
AT2G38995 10.0kb downstream | 10.0kb | downstream | 10000 | false | Chr2: 16284869-16294868 | Arabidopsis thaliana |
10 Protein Familys
Cluster ID | Method ID | Method Name | Sequence Alignment |
---|---|---|---|
122381552 | 5261 | Brassicaceae | View MSA |
123803305 | 5264 | Brassicales-Malvales | View MSA |
124300422 | 5266 | SBM | View MSA |
124151609 | 5268 | Malvidae | View MSA |
124072353 | 5270 | Rosid | View MSA |
123749646 | 5271 | Pentapetalae | View MSA |
122794217 | 5272 | Eudicot | View MSA |
122046091 | 5273 | Angiosperm | View MSA |
123428993 | 5275 | Viridiplantae | View MSA |
121351027 | 5274 | Embryophyte | View MSA |
6 Rna Seq Expressionss
Analysis Method | Abundance | Low Confidence Limit | High Confidence Limit | Relative Library Expression | Relative Locus Expression |
---|---|---|---|---|---|
cufflinks | 2.413 | ||||
cufflinks | 0.0 | Not Expressed | Not Expressed | ||
cufflinks | 1.132 | ||||
cufflinks | 0.0 | Not Expressed | Not Expressed | ||
cufflinks | 1.404 | ||||
cufflinks | 0.003 | Low | Low |