Gene : AT2G04080 A. thaliana TAIR10
Defline:  (1 of 14) PTHR11206:SF87 - MATE EFFLUX FAMILY PROTEIN-RELATED Genomic Order:  311
Name:  ? AT2G04080 Secondary Identifier:  ? PAC:19643102
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G04080 0.5kb upstream 0.5kb upstream 2565 true Chr2: 1357189-1359753 Arabidopsis thaliana
AT2G04080 0.5kb upstream 0.5kb upstream 500 false Chr2: 1359254-1359753 Arabidopsis thaliana
AT2G04080 0.5kb downstream 0.5kb downstream 2565 true Chr2: 1356689-1359253 Arabidopsis thaliana
AT2G04080 0.5kb downstream 0.5kb downstream 500 false Chr2: 1356689-1357188 Arabidopsis thaliana
AT2G04080 1.0kb upstream 1.0kb upstream 3065 true Chr2: 1357189-1360253 Arabidopsis thaliana
AT2G04080 1.0kb upstream 1.0kb upstream 1000 false Chr2: 1359254-1360253 Arabidopsis thaliana
AT2G04080 1.0kb downstream 1.0kb downstream 3065 true Chr2: 1356189-1359253 Arabidopsis thaliana
AT2G04080 1.0kb downstream 1.0kb downstream 1000 false Chr2: 1356189-1357188 Arabidopsis thaliana
AT2G04080 2.0kb upstream 2.0kb upstream 4065 true Chr2: 1357189-1361253 Arabidopsis thaliana
AT2G04080 2.0kb upstream 2.0kb upstream 2000 false Chr2: 1359254-1361253 Arabidopsis thaliana
AT2G04080 2.0kb downstream 2.0kb downstream 4065 true Chr2: 1355189-1359253 Arabidopsis thaliana
AT2G04080 2.0kb downstream 2.0kb downstream 2000 false Chr2: 1355189-1357188 Arabidopsis thaliana
AT2G04080 5.0kb upstream 5.0kb upstream 7065 true Chr2: 1357189-1364253 Arabidopsis thaliana
AT2G04080 5.0kb upstream 5.0kb upstream 5000 false Chr2: 1359254-1364253 Arabidopsis thaliana
AT2G04080 5.0kb downstream 5.0kb downstream 7065 true Chr2: 1352189-1359253 Arabidopsis thaliana
AT2G04080 5.0kb downstream 5.0kb downstream 5000 false Chr2: 1352189-1357188 Arabidopsis thaliana
AT2G04080 10.0kb upstream 10.0kb upstream 12065 true Chr2: 1357189-1369253 Arabidopsis thaliana
AT2G04080 10.0kb upstream 10.0kb upstream 10000 false Chr2: 1359254-1369253 Arabidopsis thaliana
AT2G04080 10.0kb downstream 10.0kb downstream 12065 true Chr2: 1347189-1359253 Arabidopsis thaliana
AT2G04080 10.0kb downstream 10.0kb downstream 10000 false Chr2: 1347189-1357188 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379492 5261 Brassicaceae View MSA
123838699 5264 Brassicales-Malvales View MSA
124346775 5266 SBM View MSA
124254486 5268 Malvidae View MSA
124070136 5270 Rosid View MSA
123747121 5271 Pentapetalae View MSA
122794225 5272 Eudicot View MSA
122042479 5273 Angiosperm View MSA
121350842 5274 Embryophyte View MSA
123428088 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 20.418        
cufflinks 7.098       Low
cufflinks 23.294        
cufflinks 12.392        
cufflinks 29.578     High High
cufflinks 6.767       Low

0 Strain