Gene : AT2G03820 A. thaliana TAIR10
Defline:  (1 of 1) K07562 - nonsense-mediated mRNA decay protein 3 (NMD3) Genomic Order:  274
Name:  ? AT2G03820 Secondary Identifier:  ? PAC:19643265
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G03820 0.5kb upstream 0.5kb upstream 2573 true Chr2: 1164957-1167529 Arabidopsis thaliana
AT2G03820 0.5kb upstream 0.5kb upstream 500 false Chr2: 1167030-1167529 Arabidopsis thaliana
AT2G03820 0.5kb downstream 0.5kb downstream 2573 true Chr2: 1164457-1167029 Arabidopsis thaliana
AT2G03820 0.5kb downstream 0.5kb downstream 500 false Chr2: 1164457-1164956 Arabidopsis thaliana
AT2G03820 1.0kb upstream 1.0kb upstream 3073 true Chr2: 1164957-1168029 Arabidopsis thaliana
AT2G03820 1.0kb upstream 1.0kb upstream 1000 false Chr2: 1167030-1168029 Arabidopsis thaliana
AT2G03820 1.0kb downstream 1.0kb downstream 3073 true Chr2: 1163957-1167029 Arabidopsis thaliana
AT2G03820 1.0kb downstream 1.0kb downstream 1000 false Chr2: 1163957-1164956 Arabidopsis thaliana
AT2G03820 2.0kb upstream 2.0kb upstream 4073 true Chr2: 1164957-1169029 Arabidopsis thaliana
AT2G03820 2.0kb upstream 2.0kb upstream 2000 false Chr2: 1167030-1169029 Arabidopsis thaliana
AT2G03820 2.0kb downstream 2.0kb downstream 4073 true Chr2: 1162957-1167029 Arabidopsis thaliana
AT2G03820 2.0kb downstream 2.0kb downstream 2000 false Chr2: 1162957-1164956 Arabidopsis thaliana
AT2G03820 5.0kb upstream 5.0kb upstream 7073 true Chr2: 1164957-1172029 Arabidopsis thaliana
AT2G03820 5.0kb upstream 5.0kb upstream 5000 false Chr2: 1167030-1172029 Arabidopsis thaliana
AT2G03820 5.0kb downstream 5.0kb downstream 7073 true Chr2: 1159957-1167029 Arabidopsis thaliana
AT2G03820 5.0kb downstream 5.0kb downstream 5000 false Chr2: 1159957-1164956 Arabidopsis thaliana
AT2G03820 10.0kb upstream 10.0kb upstream 12073 true Chr2: 1164957-1177029 Arabidopsis thaliana
AT2G03820 10.0kb upstream 10.0kb upstream 10000 false Chr2: 1167030-1177029 Arabidopsis thaliana
AT2G03820 10.0kb downstream 10.0kb downstream 12073 true Chr2: 1154957-1167029 Arabidopsis thaliana
AT2G03820 10.0kb downstream 10.0kb downstream 10000 false Chr2: 1154957-1164956 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041150 5273 Angiosperm View MSA
122361791 5261 Brassicaceae View MSA
123831637 5264 Brassicales-Malvales View MSA
124350698 5266 SBM View MSA
124241082 5268 Malvidae View MSA
124068497 5270 Rosid View MSA
123740030 5271 Pentapetalae View MSA
122786689 5272 Eudicot View MSA
121346999 5274 Embryophyte View MSA
123425713 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 38.428     High Low
cufflinks 59.209     High  
cufflinks 41.195     High  
cufflinks 62.668     High High
cufflinks 39.699     High  
cufflinks 60.935     High  

0 Strain