Gene : AT2G23780 A. thaliana TAIR10
Defline:  (1 of 1) PTHR12313//PTHR12313:SF12 - RNF5 // RING ZINC FINGER PROTEIN-RELATED Genomic Order:  1642
Name:  ? AT2G23780 Secondary Identifier:  ? PAC:19640806
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-7511 Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G23780 0.5kb upstream 0.5kb upstream 1831 true Chr2: 10123306-10125136 Arabidopsis thaliana
AT2G23780 0.5kb upstream 0.5kb upstream 500 false Chr2: 10124637-10125136 Arabidopsis thaliana
AT2G23780 0.5kb downstream 0.5kb downstream 1831 true Chr2: 10122806-10124636 Arabidopsis thaliana
AT2G23780 0.5kb downstream 0.5kb downstream 500 false Chr2: 10122806-10123305 Arabidopsis thaliana
AT2G23780 1.0kb upstream 1.0kb upstream 2331 true Chr2: 10123306-10125636 Arabidopsis thaliana
AT2G23780 1.0kb upstream 1.0kb upstream 1000 false Chr2: 10124637-10125636 Arabidopsis thaliana
AT2G23780 1.0kb downstream 1.0kb downstream 2331 true Chr2: 10122306-10124636 Arabidopsis thaliana
AT2G23780 1.0kb downstream 1.0kb downstream 1000 false Chr2: 10122306-10123305 Arabidopsis thaliana
AT2G23780 2.0kb upstream 2.0kb upstream 3331 true Chr2: 10123306-10126636 Arabidopsis thaliana
AT2G23780 2.0kb upstream 2.0kb upstream 2000 false Chr2: 10124637-10126636 Arabidopsis thaliana
AT2G23780 2.0kb downstream 2.0kb downstream 3331 true Chr2: 10121306-10124636 Arabidopsis thaliana
AT2G23780 2.0kb downstream 2.0kb downstream 2000 false Chr2: 10121306-10123305 Arabidopsis thaliana
AT2G23780 5.0kb upstream 5.0kb upstream 6331 true Chr2: 10123306-10129636 Arabidopsis thaliana
AT2G23780 5.0kb upstream 5.0kb upstream 5000 false Chr2: 10124637-10129636 Arabidopsis thaliana
AT2G23780 5.0kb downstream 5.0kb downstream 6331 true Chr2: 10118306-10124636 Arabidopsis thaliana
AT2G23780 5.0kb downstream 5.0kb downstream 5000 false Chr2: 10118306-10123305 Arabidopsis thaliana
AT2G23780 10.0kb upstream 10.0kb upstream 11331 true Chr2: 10123306-10134636 Arabidopsis thaliana
AT2G23780 10.0kb upstream 10.0kb upstream 10000 false Chr2: 10124637-10134636 Arabidopsis thaliana
AT2G23780 10.0kb downstream 10.0kb downstream 11331 true Chr2: 10113306-10124636 Arabidopsis thaliana
AT2G23780 10.0kb downstream 10.0kb downstream 10000 false Chr2: 10113306-10123305 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363032 5261 Brassicaceae View MSA
123827533 5264 Brassicales-Malvales View MSA
124340698 5266 SBM View MSA
124252660 5268 Malvidae View MSA
124066658 5270 Rosid View MSA
123750017 5271 Pentapetalae View MSA
122793132 5272 Eudicot View MSA
122043579 5273 Angiosperm View MSA
121350090 5274 Embryophyte View MSA
123428794 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 27.96        
cufflinks 36.636     High  
cufflinks 23.822       Low
cufflinks 36.374     High  
cufflinks 23.564       Low
cufflinks 37.916     High  

0 Strain