Gene : AGL20 A. thaliana TAIR10
Primary Identifier:  ? AT2G45660 Defline:  (1 of 3) PTHR11945:SF208 - MADS-BOX PROTEIN SOC1
Genomic Order:  3985 Name:  ? AT2G45660
Secondary Identifier:  ? PAC:19641052
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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G45660 0.5kb upstream 0.5kb upstream 4010 true Chr2: 18807538-18811547 Arabidopsis thaliana
AT2G45660 0.5kb upstream 0.5kb upstream 500 false Chr2: 18811048-18811547 Arabidopsis thaliana
AT2G45660 0.5kb downstream 0.5kb downstream 4010 true Chr2: 18807038-18811047 Arabidopsis thaliana
AT2G45660 0.5kb downstream 0.5kb downstream 500 false Chr2: 18807038-18807537 Arabidopsis thaliana
AT2G45660 1.0kb upstream 1.0kb upstream 4510 true Chr2: 18807538-18812047 Arabidopsis thaliana
AT2G45660 1.0kb upstream 1.0kb upstream 1000 false Chr2: 18811048-18812047 Arabidopsis thaliana
AT2G45660 1.0kb downstream 1.0kb downstream 4510 true Chr2: 18806538-18811047 Arabidopsis thaliana
AT2G45660 1.0kb downstream 1.0kb downstream 1000 false Chr2: 18806538-18807537 Arabidopsis thaliana
AT2G45660 2.0kb upstream 2.0kb upstream 5510 true Chr2: 18807538-18813047 Arabidopsis thaliana
AT2G45660 2.0kb upstream 2.0kb upstream 2000 false Chr2: 18811048-18813047 Arabidopsis thaliana
AT2G45660 2.0kb downstream 2.0kb downstream 5510 true Chr2: 18805538-18811047 Arabidopsis thaliana
AT2G45660 2.0kb downstream 2.0kb downstream 2000 false Chr2: 18805538-18807537 Arabidopsis thaliana
AT2G45660 5.0kb upstream 5.0kb upstream 8510 true Chr2: 18807538-18816047 Arabidopsis thaliana
AT2G45660 5.0kb upstream 5.0kb upstream 5000 false Chr2: 18811048-18816047 Arabidopsis thaliana
AT2G45660 5.0kb downstream 5.0kb downstream 8510 true Chr2: 18802538-18811047 Arabidopsis thaliana
AT2G45660 5.0kb downstream 5.0kb downstream 5000 false Chr2: 18802538-18807537 Arabidopsis thaliana
AT2G45660 10.0kb upstream 10.0kb upstream 13510 true Chr2: 18807538-18821047 Arabidopsis thaliana
AT2G45660 10.0kb upstream 10.0kb upstream 10000 false Chr2: 18811048-18821047 Arabidopsis thaliana
AT2G45660 10.0kb downstream 10.0kb downstream 13510 true Chr2: 18797538-18811047 Arabidopsis thaliana
AT2G45660 10.0kb downstream 10.0kb downstream 10000 false Chr2: 18797538-18807537 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380649 5261 Brassicaceae View MSA
123834671 5264 Brassicales-Malvales View MSA
124347813 5266 SBM View MSA
124252932 5268 Malvidae View MSA
124073798 5270 Rosid View MSA
123750432 5271 Pentapetalae View MSA
122795311 5272 Eudicot View MSA
122042392 5273 Angiosperm View MSA
121309956 5274 Embryophyte View MSA
123347576 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.78        
cufflinks 17.616        
cufflinks 24.682        
cufflinks 22.797        
cufflinks 31.571     High High
cufflinks 16.554       Low

0 Strain