Gene : ATCS A. thaliana TAIR10
Primary Identifier:  ? AT2G44350 Defline:  (1 of 2) PTHR11739:SF8 - CITRATE SYNTHASE, MITOCHONDRIAL
Genomic Order:  3849 Name:  ? AT2G44350
Secondary Identifier:  ? PAC:19640596
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Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana GLYOXYLATE-BYPASS Arabidopsis thaliana pathologic  
Athaliana PWY-5464 Arabidopsis thaliana pathologic  
Athaliana PWY-561 Arabidopsis thaliana pathologic  
Athaliana PWY-5690 Arabidopsis thaliana pathologic  
Athaliana PWY-6549 Arabidopsis thaliana pathologic  

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G44350 0.5kb upstream 0.5kb upstream 5012 true Chr2: 18315778-18320789 Arabidopsis thaliana
AT2G44350 0.5kb upstream 0.5kb upstream 500 false Chr2: 18315778-18316277 Arabidopsis thaliana
AT2G44350 0.5kb downstream 0.5kb downstream 5012 true Chr2: 18316278-18321289 Arabidopsis thaliana
AT2G44350 0.5kb downstream 0.5kb downstream 500 false Chr2: 18320790-18321289 Arabidopsis thaliana
AT2G44350 1.0kb upstream 1.0kb upstream 5512 true Chr2: 18315278-18320789 Arabidopsis thaliana
AT2G44350 1.0kb upstream 1.0kb upstream 1000 false Chr2: 18315278-18316277 Arabidopsis thaliana
AT2G44350 1.0kb downstream 1.0kb downstream 5512 true Chr2: 18316278-18321789 Arabidopsis thaliana
AT2G44350 1.0kb downstream 1.0kb downstream 1000 false Chr2: 18320790-18321789 Arabidopsis thaliana
AT2G44350 2.0kb upstream 2.0kb upstream 6512 true Chr2: 18314278-18320789 Arabidopsis thaliana
AT2G44350 2.0kb upstream 2.0kb upstream 2000 false Chr2: 18314278-18316277 Arabidopsis thaliana
AT2G44350 2.0kb downstream 2.0kb downstream 6512 true Chr2: 18316278-18322789 Arabidopsis thaliana
AT2G44350 2.0kb downstream 2.0kb downstream 2000 false Chr2: 18320790-18322789 Arabidopsis thaliana
AT2G44350 5.0kb upstream 5.0kb upstream 9512 true Chr2: 18311278-18320789 Arabidopsis thaliana
AT2G44350 5.0kb upstream 5.0kb upstream 5000 false Chr2: 18311278-18316277 Arabidopsis thaliana
AT2G44350 5.0kb downstream 5.0kb downstream 9512 true Chr2: 18316278-18325789 Arabidopsis thaliana
AT2G44350 5.0kb downstream 5.0kb downstream 5000 false Chr2: 18320790-18325789 Arabidopsis thaliana
AT2G44350 10.0kb upstream 10.0kb upstream 14512 true Chr2: 18306278-18320789 Arabidopsis thaliana
AT2G44350 10.0kb upstream 10.0kb upstream 10000 false Chr2: 18306278-18316277 Arabidopsis thaliana
AT2G44350 10.0kb downstream 10.0kb downstream 14512 true Chr2: 18316278-18330789 Arabidopsis thaliana
AT2G44350 10.0kb downstream 10.0kb downstream 10000 false Chr2: 18320790-18330789 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041314 5273 Angiosperm View MSA
122364825 5261 Brassicaceae View MSA
123832003 5264 Brassicales-Malvales View MSA
124343675 5266 SBM View MSA
124250397 5268 Malvidae View MSA
124068700 5270 Rosid View MSA
123737684 5271 Pentapetalae View MSA
122792616 5272 Eudicot View MSA
121345226 5274 Embryophyte View MSA
123424186 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.61       Low
cufflinks 13.385        
cufflinks 11.853        
cufflinks 16.037       High
cufflinks 13.18        
cufflinks 15.391       High

0 Strain