Gene : AT2G42960 A. thaliana TAIR10
Defline:  (1 of 2) PTHR27001//PTHR27001:SF221 - FAMILY NOT NAMED // PROTEIN KINASE FAMILY PROTEIN Genomic Order:  3697
Name:  ? AT2G42960 Secondary Identifier:  ? PAC:19640143
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G42960 0.5kb upstream 0.5kb upstream 2534 true Chr2: 17868597-17871130 Arabidopsis thaliana
AT2G42960 0.5kb upstream 0.5kb upstream 500 false Chr2: 17870631-17871130 Arabidopsis thaliana
AT2G42960 0.5kb downstream 0.5kb downstream 2534 true Chr2: 17868097-17870630 Arabidopsis thaliana
AT2G42960 0.5kb downstream 0.5kb downstream 500 false Chr2: 17868097-17868596 Arabidopsis thaliana
AT2G42960 1.0kb upstream 1.0kb upstream 3034 true Chr2: 17868597-17871630 Arabidopsis thaliana
AT2G42960 1.0kb upstream 1.0kb upstream 1000 false Chr2: 17870631-17871630 Arabidopsis thaliana
AT2G42960 1.0kb downstream 1.0kb downstream 3034 true Chr2: 17867597-17870630 Arabidopsis thaliana
AT2G42960 1.0kb downstream 1.0kb downstream 1000 false Chr2: 17867597-17868596 Arabidopsis thaliana
AT2G42960 2.0kb upstream 2.0kb upstream 4034 true Chr2: 17868597-17872630 Arabidopsis thaliana
AT2G42960 2.0kb upstream 2.0kb upstream 2000 false Chr2: 17870631-17872630 Arabidopsis thaliana
AT2G42960 2.0kb downstream 2.0kb downstream 4034 true Chr2: 17866597-17870630 Arabidopsis thaliana
AT2G42960 2.0kb downstream 2.0kb downstream 2000 false Chr2: 17866597-17868596 Arabidopsis thaliana
AT2G42960 5.0kb upstream 5.0kb upstream 7034 true Chr2: 17868597-17875630 Arabidopsis thaliana
AT2G42960 5.0kb upstream 5.0kb upstream 5000 false Chr2: 17870631-17875630 Arabidopsis thaliana
AT2G42960 5.0kb downstream 5.0kb downstream 7034 true Chr2: 17863597-17870630 Arabidopsis thaliana
AT2G42960 5.0kb downstream 5.0kb downstream 5000 false Chr2: 17863597-17868596 Arabidopsis thaliana
AT2G42960 10.0kb upstream 10.0kb upstream 12034 true Chr2: 17868597-17880630 Arabidopsis thaliana
AT2G42960 10.0kb upstream 10.0kb upstream 10000 false Chr2: 17870631-17880630 Arabidopsis thaliana
AT2G42960 10.0kb downstream 10.0kb downstream 12034 true Chr2: 17858597-17870630 Arabidopsis thaliana
AT2G42960 10.0kb downstream 10.0kb downstream 10000 false Chr2: 17858597-17868596 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369177 5261 Brassicaceae View MSA
123838721 5264 Brassicales-Malvales View MSA
124338980 5266 SBM View MSA
124251696 5268 Malvidae View MSA
124074886 5270 Rosid View MSA
123753765 5271 Pentapetalae View MSA
122797900 5272 Eudicot View MSA
122051692 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121351748 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.81       Low
cufflinks 10.775        
cufflinks 4.078        
cufflinks 11.862       High
cufflinks 2.742       Low
cufflinks 7.581        

0 Strain