Gene : PGAZAT A. thaliana TAIR10
Primary Identifier:  ? AT2G41850 Defline:  (1 of 2) PTHR31375//PTHR31375:SF3 - FAMILY NOT NAMED // POLYGALACTURONASE ADPG1-RELATED
Genomic Order:  3584 Name:  ? AT2G41850
Secondary Identifier:  ? PAC:19640091
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-1081 Arabidopsis thaliana pathologic  

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G41850 0.5kb upstream 0.5kb upstream 3007 true Chr2: 17461655-17464661 Arabidopsis thaliana
AT2G41850 0.5kb upstream 0.5kb upstream 500 false Chr2: 17464162-17464661 Arabidopsis thaliana
AT2G41850 0.5kb downstream 0.5kb downstream 3007 true Chr2: 17461155-17464161 Arabidopsis thaliana
AT2G41850 0.5kb downstream 0.5kb downstream 500 false Chr2: 17461155-17461654 Arabidopsis thaliana
AT2G41850 1.0kb upstream 1.0kb upstream 3507 true Chr2: 17461655-17465161 Arabidopsis thaliana
AT2G41850 1.0kb upstream 1.0kb upstream 1000 false Chr2: 17464162-17465161 Arabidopsis thaliana
AT2G41850 1.0kb downstream 1.0kb downstream 3507 true Chr2: 17460655-17464161 Arabidopsis thaliana
AT2G41850 1.0kb downstream 1.0kb downstream 1000 false Chr2: 17460655-17461654 Arabidopsis thaliana
AT2G41850 2.0kb upstream 2.0kb upstream 4507 true Chr2: 17461655-17466161 Arabidopsis thaliana
AT2G41850 2.0kb upstream 2.0kb upstream 2000 false Chr2: 17464162-17466161 Arabidopsis thaliana
AT2G41850 2.0kb downstream 2.0kb downstream 4507 true Chr2: 17459655-17464161 Arabidopsis thaliana
AT2G41850 2.0kb downstream 2.0kb downstream 2000 false Chr2: 17459655-17461654 Arabidopsis thaliana
AT2G41850 5.0kb upstream 5.0kb upstream 7507 true Chr2: 17461655-17469161 Arabidopsis thaliana
AT2G41850 5.0kb upstream 5.0kb upstream 5000 false Chr2: 17464162-17469161 Arabidopsis thaliana
AT2G41850 5.0kb downstream 5.0kb downstream 7507 true Chr2: 17456655-17464161 Arabidopsis thaliana
AT2G41850 5.0kb downstream 5.0kb downstream 5000 false Chr2: 17456655-17461654 Arabidopsis thaliana
AT2G41850 10.0kb upstream 10.0kb upstream 12507 true Chr2: 17461655-17474161 Arabidopsis thaliana
AT2G41850 10.0kb upstream 10.0kb upstream 10000 false Chr2: 17464162-17474161 Arabidopsis thaliana
AT2G41850 10.0kb downstream 10.0kb downstream 12507 true Chr2: 17451655-17464161 Arabidopsis thaliana
AT2G41850 10.0kb downstream 10.0kb downstream 10000 false Chr2: 17451655-17461654 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368990 5261 Brassicaceae View MSA
123838007 5264 Brassicales-Malvales View MSA
124346929 5266 SBM View MSA
124251426 5268 Malvidae View MSA
124073768 5270 Rosid View MSA
123750458 5271 Pentapetalae View MSA
122794874 5272 Eudicot View MSA
122047278 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.503        
cufflinks 0.03     Low Low
cufflinks 0.168     Low  
cufflinks 0.375     Low  
cufflinks 1.01       High
cufflinks 0.063     Low  

0 Strain