Gene : AT2G48030 A. thaliana TAIR10
Defline:  (1 of 2) PTHR14859 - CALCOFLUOR WHITE HYPERSENSITIVE PROTEIN PRECURSOR Genomic Order:  4232
Name:  ? AT2G48030 Secondary Identifier:  ? PAC:19643509
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G48030 0.5kb upstream 0.5kb upstream 3126 true Chr2: 19647523-19650648 Arabidopsis thaliana
AT2G48030 0.5kb upstream 0.5kb upstream 500 false Chr2: 19650149-19650648 Arabidopsis thaliana
AT2G48030 0.5kb downstream 0.5kb downstream 3126 true Chr2: 19647023-19650148 Arabidopsis thaliana
AT2G48030 0.5kb downstream 0.5kb downstream 500 false Chr2: 19647023-19647522 Arabidopsis thaliana
AT2G48030 1.0kb upstream 1.0kb upstream 3626 true Chr2: 19647523-19651148 Arabidopsis thaliana
AT2G48030 1.0kb upstream 1.0kb upstream 1000 false Chr2: 19650149-19651148 Arabidopsis thaliana
AT2G48030 1.0kb downstream 1.0kb downstream 3626 true Chr2: 19646523-19650148 Arabidopsis thaliana
AT2G48030 1.0kb downstream 1.0kb downstream 1000 false Chr2: 19646523-19647522 Arabidopsis thaliana
AT2G48030 2.0kb upstream 2.0kb upstream 4626 true Chr2: 19647523-19652148 Arabidopsis thaliana
AT2G48030 2.0kb upstream 2.0kb upstream 2000 false Chr2: 19650149-19652148 Arabidopsis thaliana
AT2G48030 2.0kb downstream 2.0kb downstream 4626 true Chr2: 19645523-19650148 Arabidopsis thaliana
AT2G48030 2.0kb downstream 2.0kb downstream 2000 false Chr2: 19645523-19647522 Arabidopsis thaliana
AT2G48030 5.0kb upstream 5.0kb upstream 7626 true Chr2: 19647523-19655148 Arabidopsis thaliana
AT2G48030 5.0kb upstream 5.0kb upstream 5000 false Chr2: 19650149-19655148 Arabidopsis thaliana
AT2G48030 5.0kb downstream 5.0kb downstream 7626 true Chr2: 19642523-19650148 Arabidopsis thaliana
AT2G48030 5.0kb downstream 5.0kb downstream 5000 false Chr2: 19642523-19647522 Arabidopsis thaliana
AT2G48030 10.0kb upstream 10.0kb upstream 12626 true Chr2: 19647523-19660148 Arabidopsis thaliana
AT2G48030 10.0kb upstream 10.0kb upstream 10000 false Chr2: 19650149-19660148 Arabidopsis thaliana
AT2G48030 10.0kb downstream 10.0kb downstream 12626 true Chr2: 19637523-19650148 Arabidopsis thaliana
AT2G48030 10.0kb downstream 10.0kb downstream 10000 false Chr2: 19637523-19647522 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372761 5261 Brassicaceae View MSA
123829007 5264 Brassicales-Malvales View MSA
124342318 5266 SBM View MSA
124241775 5268 Malvidae View MSA
124067214 5270 Rosid View MSA
123743998 5271 Pentapetalae View MSA
122789343 5272 Eudicot View MSA
122044704 5273 Angiosperm View MSA
121310332 5274 Embryophyte View MSA
123347845 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.574       High
cufflinks 4.914        
cufflinks 4.113       Low
cufflinks 5.495        
cufflinks 4.6        
cufflinks 6.027        

0 Strain