Gene : Bradi1g00470 B. distachyon v3.1
Defline:  (1 of 1) PTHR11260:SF220 - GST-CONTAINING FLYWCH ZINC-FINGER PROTEIN Genomic Order:  49
Name:  ? Bradi1g00470 Secondary Identifier:  ? PAC:32802450
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-6842 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g00470 0.5kb upstream 0.5kb upstream 3870 true Bd1: 398698-402567 Brachypodium distachyon
Bradi1g00470 0.5kb upstream 0.5kb upstream 500 false Bd1: 398698-399197 Brachypodium distachyon
Bradi1g00470 0.5kb downstream 0.5kb downstream 3870 true Bd1: 399198-403067 Brachypodium distachyon
Bradi1g00470 0.5kb downstream 0.5kb downstream 500 false Bd1: 402568-403067 Brachypodium distachyon
Bradi1g00470 1.0kb upstream 1.0kb upstream 4370 true Bd1: 398198-402567 Brachypodium distachyon
Bradi1g00470 1.0kb upstream 1.0kb upstream 1000 false Bd1: 398198-399197 Brachypodium distachyon
Bradi1g00470 1.0kb downstream 1.0kb downstream 4370 true Bd1: 399198-403567 Brachypodium distachyon
Bradi1g00470 1.0kb downstream 1.0kb downstream 1000 false Bd1: 402568-403567 Brachypodium distachyon
Bradi1g00470 2.0kb upstream 2.0kb upstream 5370 true Bd1: 397198-402567 Brachypodium distachyon
Bradi1g00470 2.0kb upstream 2.0kb upstream 2000 false Bd1: 397198-399197 Brachypodium distachyon
Bradi1g00470 2.0kb downstream 2.0kb downstream 5370 true Bd1: 399198-404567 Brachypodium distachyon
Bradi1g00470 2.0kb downstream 2.0kb downstream 2000 false Bd1: 402568-404567 Brachypodium distachyon
Bradi1g00470 5.0kb upstream 5.0kb upstream 8370 true Bd1: 394198-402567 Brachypodium distachyon
Bradi1g00470 5.0kb upstream 5.0kb upstream 5000 false Bd1: 394198-399197 Brachypodium distachyon
Bradi1g00470 5.0kb downstream 5.0kb downstream 8370 true Bd1: 399198-407567 Brachypodium distachyon
Bradi1g00470 5.0kb downstream 5.0kb downstream 5000 false Bd1: 402568-407567 Brachypodium distachyon
Bradi1g00470 10.0kb upstream 10.0kb upstream 13370 true Bd1: 389198-402567 Brachypodium distachyon
Bradi1g00470 10.0kb upstream 10.0kb upstream 10000 false Bd1: 389198-399197 Brachypodium distachyon
Bradi1g00470 10.0kb downstream 10.0kb downstream 13370 true Bd1: 399198-412567 Brachypodium distachyon
Bradi1g00470 10.0kb downstream 10.0kb downstream 10000 false Bd1: 402568-412567 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040873 5273 Angiosperm View MSA
124585704 5269 Grass View MSA
121350998 5274 Embryophyte View MSA
123428193 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.031        
cufflinks 7.94        
cufflinks 8.334        
cufflinks 11.034     High  
cufflinks 11.145     High  
cufflinks 8.279        
cufflinks 7.929        
cufflinks 7.316       Low
cufflinks 7.702        
cufflinks 11.592     High  
cufflinks 11.672     High  
cufflinks 7.859        
cufflinks 9.961     High  
cufflinks 10.212     High  
cufflinks 10.336     High  
cufflinks 7.373       Low
cufflinks 10.217        
cufflinks 8.804        
cufflinks 10.715        
cufflinks 24.26     High High
cufflinks 9.685        
cufflinks 8.573        
cufflinks 7.577       Low
cufflinks 9.068        
cufflinks 8.865        
cufflinks 11.519     High  
cufflinks 13.256     High High
cufflinks 11.366     High  
cufflinks 9.408        
cufflinks 7.08       Low

0 Strain