Gene : Bradi1g04292 B. distachyon v3.1
Defline:  (1 of 19) PF00533 - BRCA1 C Terminus (BRCT) domain Genomic Order:  543
Name:  ? Bradi1g04292 Secondary Identifier:  ? PAC:32801039
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g04292 0.5kb upstream 0.5kb upstream 6691 true Bd1: 2917126-2923816 Brachypodium distachyon
Bradi1g04292 0.5kb upstream 0.5kb upstream 500 false Bd1: 2923317-2923816 Brachypodium distachyon
Bradi1g04292 0.5kb downstream 0.5kb downstream 6691 true Bd1: 2916626-2923316 Brachypodium distachyon
Bradi1g04292 0.5kb downstream 0.5kb downstream 500 false Bd1: 2916626-2917125 Brachypodium distachyon
Bradi1g04292 1.0kb upstream 1.0kb upstream 7191 true Bd1: 2917126-2924316 Brachypodium distachyon
Bradi1g04292 1.0kb upstream 1.0kb upstream 1000 false Bd1: 2923317-2924316 Brachypodium distachyon
Bradi1g04292 1.0kb downstream 1.0kb downstream 7191 true Bd1: 2916126-2923316 Brachypodium distachyon
Bradi1g04292 1.0kb downstream 1.0kb downstream 1000 false Bd1: 2916126-2917125 Brachypodium distachyon
Bradi1g04292 2.0kb upstream 2.0kb upstream 8191 true Bd1: 2917126-2925316 Brachypodium distachyon
Bradi1g04292 2.0kb upstream 2.0kb upstream 2000 false Bd1: 2923317-2925316 Brachypodium distachyon
Bradi1g04292 2.0kb downstream 2.0kb downstream 8191 true Bd1: 2915126-2923316 Brachypodium distachyon
Bradi1g04292 2.0kb downstream 2.0kb downstream 2000 false Bd1: 2915126-2917125 Brachypodium distachyon
Bradi1g04292 5.0kb upstream 5.0kb upstream 11191 true Bd1: 2917126-2928316 Brachypodium distachyon
Bradi1g04292 5.0kb upstream 5.0kb upstream 5000 false Bd1: 2923317-2928316 Brachypodium distachyon
Bradi1g04292 5.0kb downstream 5.0kb downstream 11191 true Bd1: 2912126-2923316 Brachypodium distachyon
Bradi1g04292 5.0kb downstream 5.0kb downstream 5000 false Bd1: 2912126-2917125 Brachypodium distachyon
Bradi1g04292 10.0kb upstream 10.0kb upstream 16191 true Bd1: 2917126-2933316 Brachypodium distachyon
Bradi1g04292 10.0kb upstream 10.0kb upstream 10000 false Bd1: 2923317-2933316 Brachypodium distachyon
Bradi1g04292 10.0kb downstream 10.0kb downstream 16191 true Bd1: 2907126-2923316 Brachypodium distachyon
Bradi1g04292 10.0kb downstream 10.0kb downstream 10000 false Bd1: 2907126-2917125 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124587970 5269 Grass View MSA
122048777 5273 Angiosperm View MSA
121349208 5274 Embryophyte View MSA
123381216 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.116        
cufflinks 0.14        
cufflinks 0.124        
cufflinks 0.108        
cufflinks 0.053     Low  
cufflinks 0.12        
cufflinks 0.104        
cufflinks 0.111        
cufflinks 0.129        
cufflinks 0.071     Low  
cufflinks 0.088        
cufflinks 0.121        
cufflinks 0.052     Low  
cufflinks 0.056     Low  
cufflinks 0.062     Low  
cufflinks 0.122        
cufflinks 0.075     Low  
cufflinks 0.286       High
cufflinks 0.056     Low  
cufflinks 0.01     Low Low
cufflinks 0.088     Low  
cufflinks 0.146        
cufflinks 0.09        
cufflinks 0.1     Low  
cufflinks 0.099     Low  
cufflinks 0.109        
cufflinks 0.049     Low  
cufflinks 0.103        
cufflinks 0.102     Low  
cufflinks 0.156        

0 Strain