Gene : Bradi1g04300 B. distachyon v3.1
Defline:  (1 of 1) K03404 - magnesium chelatase subunit D (chlD, bchD) Genomic Order:  544
Name:  ? Bradi1g04300 Secondary Identifier:  ? PAC:32803323
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon CHLOROPHYLL-SYN Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g04300 0.5kb upstream 0.5kb upstream 7349 true Bd1: 2924058-2931406 Brachypodium distachyon
Bradi1g04300 0.5kb upstream 0.5kb upstream 500 false Bd1: 2930907-2931406 Brachypodium distachyon
Bradi1g04300 0.5kb downstream 0.5kb downstream 7349 true Bd1: 2923558-2930906 Brachypodium distachyon
Bradi1g04300 0.5kb downstream 0.5kb downstream 500 false Bd1: 2923558-2924057 Brachypodium distachyon
Bradi1g04300 1.0kb upstream 1.0kb upstream 7849 true Bd1: 2924058-2931906 Brachypodium distachyon
Bradi1g04300 1.0kb upstream 1.0kb upstream 1000 false Bd1: 2930907-2931906 Brachypodium distachyon
Bradi1g04300 1.0kb downstream 1.0kb downstream 7849 true Bd1: 2923058-2930906 Brachypodium distachyon
Bradi1g04300 1.0kb downstream 1.0kb downstream 1000 false Bd1: 2923058-2924057 Brachypodium distachyon
Bradi1g04300 2.0kb upstream 2.0kb upstream 8849 true Bd1: 2924058-2932906 Brachypodium distachyon
Bradi1g04300 2.0kb upstream 2.0kb upstream 2000 false Bd1: 2930907-2932906 Brachypodium distachyon
Bradi1g04300 2.0kb downstream 2.0kb downstream 8849 true Bd1: 2922058-2930906 Brachypodium distachyon
Bradi1g04300 2.0kb downstream 2.0kb downstream 2000 false Bd1: 2922058-2924057 Brachypodium distachyon
Bradi1g04300 5.0kb upstream 5.0kb upstream 11849 true Bd1: 2924058-2935906 Brachypodium distachyon
Bradi1g04300 5.0kb upstream 5.0kb upstream 5000 false Bd1: 2930907-2935906 Brachypodium distachyon
Bradi1g04300 5.0kb downstream 5.0kb downstream 11849 true Bd1: 2919058-2930906 Brachypodium distachyon
Bradi1g04300 5.0kb downstream 5.0kb downstream 5000 false Bd1: 2919058-2924057 Brachypodium distachyon
Bradi1g04300 10.0kb upstream 10.0kb upstream 16849 true Bd1: 2924058-2940906 Brachypodium distachyon
Bradi1g04300 10.0kb upstream 10.0kb upstream 10000 false Bd1: 2930907-2940906 Brachypodium distachyon
Bradi1g04300 10.0kb downstream 10.0kb downstream 16849 true Bd1: 2914058-2930906 Brachypodium distachyon
Bradi1g04300 10.0kb downstream 10.0kb downstream 10000 false Bd1: 2914058-2924057 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026552 5273 Angiosperm View MSA
124573827 5269 Grass View MSA
121344824 5274 Embryophyte View MSA
123424530 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 34.584     High  
cufflinks 64.3     High  
cufflinks 58.349     High  
cufflinks 54.22     High  
cufflinks 22.638     High  
cufflinks 58.054     High  
cufflinks 55.562     High  
cufflinks 41.871     High  
cufflinks 49.645     High  
cufflinks 39.844     High  
cufflinks 52.683     High  
cufflinks 59.489     High  
cufflinks 47.983     High  
cufflinks 48.079     High  
cufflinks 35.799     High  
cufflinks 66.179     High  
cufflinks 33.025     High  
cufflinks 5.559       Low
cufflinks 24.363     High  
cufflinks 3.936       Low
cufflinks 16.16     High  
cufflinks 59.319     High  
cufflinks 40.594     High  
cufflinks 47.092     High  
cufflinks 46.77     High  
cufflinks 53.423     High  
cufflinks 35.386     High  
cufflinks 46.198     High  
cufflinks 50.109     High  
cufflinks 32.905     High  

0 Strain