Gene : Bradi1g05000 B. distachyon v3.1
Defline:  (1 of 1) PTHR10869//PTHR10869:SF65 - PROLYL 4-HYDROXYLASE ALPHA SUBUNIT // SUBFAMILY NOT NAMED Genomic Order:  628
Name:  ? Bradi1g05000 Secondary Identifier:  ? PAC:32803643
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g05000 0.5kb upstream 0.5kb upstream 3204 true Bd1: 3324904-3328107 Brachypodium distachyon
Bradi1g05000 0.5kb upstream 0.5kb upstream 500 false Bd1: 3324904-3325403 Brachypodium distachyon
Bradi1g05000 0.5kb downstream 0.5kb downstream 3204 true Bd1: 3325404-3328607 Brachypodium distachyon
Bradi1g05000 0.5kb downstream 0.5kb downstream 500 false Bd1: 3328108-3328607 Brachypodium distachyon
Bradi1g05000 1.0kb upstream 1.0kb upstream 3704 true Bd1: 3324404-3328107 Brachypodium distachyon
Bradi1g05000 1.0kb upstream 1.0kb upstream 1000 false Bd1: 3324404-3325403 Brachypodium distachyon
Bradi1g05000 1.0kb downstream 1.0kb downstream 3704 true Bd1: 3325404-3329107 Brachypodium distachyon
Bradi1g05000 1.0kb downstream 1.0kb downstream 1000 false Bd1: 3328108-3329107 Brachypodium distachyon
Bradi1g05000 2.0kb upstream 2.0kb upstream 4704 true Bd1: 3323404-3328107 Brachypodium distachyon
Bradi1g05000 2.0kb upstream 2.0kb upstream 2000 false Bd1: 3323404-3325403 Brachypodium distachyon
Bradi1g05000 2.0kb downstream 2.0kb downstream 4704 true Bd1: 3325404-3330107 Brachypodium distachyon
Bradi1g05000 2.0kb downstream 2.0kb downstream 2000 false Bd1: 3328108-3330107 Brachypodium distachyon
Bradi1g05000 5.0kb upstream 5.0kb upstream 7704 true Bd1: 3320404-3328107 Brachypodium distachyon
Bradi1g05000 5.0kb upstream 5.0kb upstream 5000 false Bd1: 3320404-3325403 Brachypodium distachyon
Bradi1g05000 5.0kb downstream 5.0kb downstream 7704 true Bd1: 3325404-3333107 Brachypodium distachyon
Bradi1g05000 5.0kb downstream 5.0kb downstream 5000 false Bd1: 3328108-3333107 Brachypodium distachyon
Bradi1g05000 10.0kb upstream 10.0kb upstream 12704 true Bd1: 3315404-3328107 Brachypodium distachyon
Bradi1g05000 10.0kb upstream 10.0kb upstream 10000 false Bd1: 3315404-3325403 Brachypodium distachyon
Bradi1g05000 10.0kb downstream 10.0kb downstream 12704 true Bd1: 3325404-3338107 Brachypodium distachyon
Bradi1g05000 10.0kb downstream 10.0kb downstream 10000 false Bd1: 3328108-3338107 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124568787 5269 Grass View MSA
122045302 5273 Angiosperm View MSA
121349816 5274 Embryophyte View MSA
123428732 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.495        
cufflinks 0.487        
cufflinks 0.615        
cufflinks 0.735        
cufflinks 1.042        
cufflinks 0.351        
cufflinks 0.467        
cufflinks 0.378        
cufflinks 0.485        
cufflinks 1.046        
cufflinks 0.19       Low
cufflinks 0.415        
cufflinks 0.138       Low
cufflinks 0.048     Low Low
cufflinks 0.161       Low
cufflinks 0.675        
cufflinks 0.231        
cufflinks 2.322       High
cufflinks 0.493        
cufflinks 1.448       High
cufflinks 2.653       High
cufflinks 0.71        
cufflinks 0.344        
cufflinks 0.36        
cufflinks 0.553        
cufflinks 0.741        
cufflinks 0.1       Low
cufflinks 0.62        
cufflinks 0.634        
cufflinks 1.063        

0 Strain