Gene : Bradi1g09950 B. distachyon v3.1
Defline:  (1 of 1) PTHR31412:SF2 - ZINC METALLOPEPTIDASE EGY3, CHLOROPLASTIC-RELATED Genomic Order:  1271
Name:  ? Bradi1g09950 Secondary Identifier:  ? PAC:32795589
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g09950 0.5kb upstream 0.5kb upstream 3389 true Bd1: 7145828-7149216 Brachypodium distachyon
Bradi1g09950 0.5kb upstream 0.5kb upstream 500 false Bd1: 7148717-7149216 Brachypodium distachyon
Bradi1g09950 0.5kb downstream 0.5kb downstream 3389 true Bd1: 7145328-7148716 Brachypodium distachyon
Bradi1g09950 0.5kb downstream 0.5kb downstream 500 false Bd1: 7145328-7145827 Brachypodium distachyon
Bradi1g09950 1.0kb upstream 1.0kb upstream 3889 true Bd1: 7145828-7149716 Brachypodium distachyon
Bradi1g09950 1.0kb upstream 1.0kb upstream 1000 false Bd1: 7148717-7149716 Brachypodium distachyon
Bradi1g09950 1.0kb downstream 1.0kb downstream 3889 true Bd1: 7144828-7148716 Brachypodium distachyon
Bradi1g09950 1.0kb downstream 1.0kb downstream 1000 false Bd1: 7144828-7145827 Brachypodium distachyon
Bradi1g09950 2.0kb upstream 2.0kb upstream 4889 true Bd1: 7145828-7150716 Brachypodium distachyon
Bradi1g09950 2.0kb upstream 2.0kb upstream 2000 false Bd1: 7148717-7150716 Brachypodium distachyon
Bradi1g09950 2.0kb downstream 2.0kb downstream 4889 true Bd1: 7143828-7148716 Brachypodium distachyon
Bradi1g09950 2.0kb downstream 2.0kb downstream 2000 false Bd1: 7143828-7145827 Brachypodium distachyon
Bradi1g09950 5.0kb upstream 5.0kb upstream 7889 true Bd1: 7145828-7153716 Brachypodium distachyon
Bradi1g09950 5.0kb upstream 5.0kb upstream 5000 false Bd1: 7148717-7153716 Brachypodium distachyon
Bradi1g09950 5.0kb downstream 5.0kb downstream 7889 true Bd1: 7140828-7148716 Brachypodium distachyon
Bradi1g09950 5.0kb downstream 5.0kb downstream 5000 false Bd1: 7140828-7145827 Brachypodium distachyon
Bradi1g09950 10.0kb upstream 10.0kb upstream 12889 true Bd1: 7145828-7158716 Brachypodium distachyon
Bradi1g09950 10.0kb upstream 10.0kb upstream 10000 false Bd1: 7148717-7158716 Brachypodium distachyon
Bradi1g09950 10.0kb downstream 10.0kb downstream 12889 true Bd1: 7135828-7148716 Brachypodium distachyon
Bradi1g09950 10.0kb downstream 10.0kb downstream 10000 false Bd1: 7135828-7145827 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124579844 5269 Grass View MSA
122042498 5273 Angiosperm View MSA
121347143 5274 Embryophyte View MSA
123425233 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.632        
cufflinks 1.23        
cufflinks 1.117        
cufflinks 1.466        
cufflinks 4.045        
cufflinks 0.814        
cufflinks 1.005        
cufflinks 5.526        
cufflinks 0.979        
cufflinks 1.059        
cufflinks 3.802        
cufflinks 5.243        
cufflinks 1.701        
cufflinks 2.213        
cufflinks 3.151        
cufflinks 0.683        
cufflinks 1.549        
cufflinks 0.032     Low Low
cufflinks 1.143        
cufflinks 5.115        
cufflinks 0.309       Low
cufflinks 1.121        
cufflinks 7.107       High
cufflinks 0.791        
cufflinks 0.682        
cufflinks 1.073        
cufflinks 0.988        
cufflinks 1.418        
cufflinks 1.299        
cufflinks 0.399        

0 Strain