Gene : Bradi1g07850 B. distachyon v3.1
Defline:  (1 of 9) PF12854//PF13041 - PPR repeat (PPR_1) // PPR repeat family (PPR_2) Genomic Order:  1011
Name:  ? Bradi1g07850 Secondary Identifier:  ? PAC:32795748
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g07850 0.5kb upstream 0.5kb upstream 3303 true Bd1: 5554009-5557311 Brachypodium distachyon
Bradi1g07850 0.5kb upstream 0.5kb upstream 500 false Bd1: 5556812-5557311 Brachypodium distachyon
Bradi1g07850 0.5kb downstream 0.5kb downstream 3303 true Bd1: 5553509-5556811 Brachypodium distachyon
Bradi1g07850 0.5kb downstream 0.5kb downstream 500 false Bd1: 5553509-5554008 Brachypodium distachyon
Bradi1g07850 1.0kb upstream 1.0kb upstream 3803 true Bd1: 5554009-5557811 Brachypodium distachyon
Bradi1g07850 1.0kb upstream 1.0kb upstream 1000 false Bd1: 5556812-5557811 Brachypodium distachyon
Bradi1g07850 1.0kb downstream 1.0kb downstream 3803 true Bd1: 5553009-5556811 Brachypodium distachyon
Bradi1g07850 1.0kb downstream 1.0kb downstream 1000 false Bd1: 5553009-5554008 Brachypodium distachyon
Bradi1g07850 2.0kb upstream 2.0kb upstream 4803 true Bd1: 5554009-5558811 Brachypodium distachyon
Bradi1g07850 2.0kb upstream 2.0kb upstream 2000 false Bd1: 5556812-5558811 Brachypodium distachyon
Bradi1g07850 2.0kb downstream 2.0kb downstream 4803 true Bd1: 5552009-5556811 Brachypodium distachyon
Bradi1g07850 2.0kb downstream 2.0kb downstream 2000 false Bd1: 5552009-5554008 Brachypodium distachyon
Bradi1g07850 5.0kb upstream 5.0kb upstream 7803 true Bd1: 5554009-5561811 Brachypodium distachyon
Bradi1g07850 5.0kb upstream 5.0kb upstream 5000 false Bd1: 5556812-5561811 Brachypodium distachyon
Bradi1g07850 5.0kb downstream 5.0kb downstream 7803 true Bd1: 5549009-5556811 Brachypodium distachyon
Bradi1g07850 5.0kb downstream 5.0kb downstream 5000 false Bd1: 5549009-5554008 Brachypodium distachyon
Bradi1g07850 10.0kb upstream 10.0kb upstream 12803 true Bd1: 5554009-5566811 Brachypodium distachyon
Bradi1g07850 10.0kb upstream 10.0kb upstream 10000 false Bd1: 5556812-5566811 Brachypodium distachyon
Bradi1g07850 10.0kb downstream 10.0kb downstream 12803 true Bd1: 5544009-5556811 Brachypodium distachyon
Bradi1g07850 10.0kb downstream 10.0kb downstream 10000 false Bd1: 5544009-5554008 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124577889 5269 Grass View MSA
122045173 5273 Angiosperm View MSA
121310410 5274 Embryophyte View MSA
123347900 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.604        
cufflinks 2.312       High
cufflinks 1.555        
cufflinks 2.014       High
cufflinks 0.343       Low
cufflinks 1.51        
cufflinks 1.991       High
cufflinks 0.656        
cufflinks 0.773        
cufflinks 0.818        
cufflinks 0.52        
cufflinks 1.154        
cufflinks 0.244       Low
cufflinks 0.295       Low
cufflinks 0.418        
cufflinks 1.493        
cufflinks 0.987        
cufflinks 2.063       High
cufflinks 1.259        
cufflinks 0.345       Low
cufflinks 1.158        
cufflinks 0.902        
cufflinks 0.636        
cufflinks 0.681        
cufflinks 1.619        
cufflinks 1.113        
cufflinks 0.22       Low
cufflinks 0.746        
cufflinks 0.907        
cufflinks 1.811       High

0 Strain