Gene : Bradi1g08390 B. distachyon v3.1
Defline:  (1 of 1) PTHR10848//PTHR10848:SF3 - MEIOTIC RECOMBINATION PROTEIN SPO11 // SUBFAMILY NOT NAMED Genomic Order:  1078
Name:  ? Bradi1g08390 Secondary Identifier:  ? PAC:32792580
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g08390 0.5kb upstream 0.5kb upstream 4640 true Bd1: 5918370-5923009 Brachypodium distachyon
Bradi1g08390 0.5kb upstream 0.5kb upstream 500 false Bd1: 5922510-5923009 Brachypodium distachyon
Bradi1g08390 0.5kb downstream 0.5kb downstream 4640 true Bd1: 5917870-5922509 Brachypodium distachyon
Bradi1g08390 0.5kb downstream 0.5kb downstream 500 false Bd1: 5917870-5918369 Brachypodium distachyon
Bradi1g08390 1.0kb upstream 1.0kb upstream 5140 true Bd1: 5918370-5923509 Brachypodium distachyon
Bradi1g08390 1.0kb upstream 1.0kb upstream 1000 false Bd1: 5922510-5923509 Brachypodium distachyon
Bradi1g08390 1.0kb downstream 1.0kb downstream 5140 true Bd1: 5917370-5922509 Brachypodium distachyon
Bradi1g08390 1.0kb downstream 1.0kb downstream 1000 false Bd1: 5917370-5918369 Brachypodium distachyon
Bradi1g08390 2.0kb upstream 2.0kb upstream 6140 true Bd1: 5918370-5924509 Brachypodium distachyon
Bradi1g08390 2.0kb upstream 2.0kb upstream 2000 false Bd1: 5922510-5924509 Brachypodium distachyon
Bradi1g08390 2.0kb downstream 2.0kb downstream 6140 true Bd1: 5916370-5922509 Brachypodium distachyon
Bradi1g08390 2.0kb downstream 2.0kb downstream 2000 false Bd1: 5916370-5918369 Brachypodium distachyon
Bradi1g08390 5.0kb upstream 5.0kb upstream 9140 true Bd1: 5918370-5927509 Brachypodium distachyon
Bradi1g08390 5.0kb upstream 5.0kb upstream 5000 false Bd1: 5922510-5927509 Brachypodium distachyon
Bradi1g08390 5.0kb downstream 5.0kb downstream 9140 true Bd1: 5913370-5922509 Brachypodium distachyon
Bradi1g08390 5.0kb downstream 5.0kb downstream 5000 false Bd1: 5913370-5918369 Brachypodium distachyon
Bradi1g08390 10.0kb upstream 10.0kb upstream 14140 true Bd1: 5918370-5932509 Brachypodium distachyon
Bradi1g08390 10.0kb upstream 10.0kb upstream 10000 false Bd1: 5922510-5932509 Brachypodium distachyon
Bradi1g08390 10.0kb downstream 10.0kb downstream 14140 true Bd1: 5908370-5922509 Brachypodium distachyon
Bradi1g08390 10.0kb downstream 10.0kb downstream 10000 false Bd1: 5908370-5918369 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124580399 5269 Grass View MSA
122045880 5273 Angiosperm View MSA
121348033 5274 Embryophyte View MSA
123427912 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.996        
cufflinks 1.539        
cufflinks 1.728        
cufflinks 1.878        
cufflinks 1.138        
cufflinks 1.331        
cufflinks 1.419        
cufflinks 1.728        
cufflinks 1.552        
cufflinks 2.143        
cufflinks 2.453       High
cufflinks 1.098        
cufflinks 1.797        
cufflinks 2.197        
cufflinks 1.952        
cufflinks 1.274        
cufflinks 1.376        
cufflinks 0.924       Low
cufflinks 1.014        
cufflinks 0.108     Low Low
cufflinks 1.5        
cufflinks 2.473       High
cufflinks 1.62        
cufflinks 1.61        
cufflinks 1.339        
cufflinks 2.472       High
cufflinks 3.18       High
cufflinks 2.352        
cufflinks 2.427       High
cufflinks 1.073        

0 Strain