Gene : Bradi1g08510 B. distachyon v3.1
Defline:  (1 of 1) PTHR22904//PTHR22904:SF312 - TPR REPEAT CONTAINING PROTEIN // CARBOXYLATE CLAMP-TETRATRICOPEPTIDE REPEAT PROTEIN Genomic Order:  1095
Name:  ? Bradi1g08510 Secondary Identifier:  ? PAC:32793434
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g08510 0.5kb upstream 0.5kb upstream 3426 true Bd1: 6003865-6007290 Brachypodium distachyon
Bradi1g08510 0.5kb upstream 0.5kb upstream 500 false Bd1: 6003865-6004364 Brachypodium distachyon
Bradi1g08510 0.5kb downstream 0.5kb downstream 3426 true Bd1: 6004365-6007790 Brachypodium distachyon
Bradi1g08510 0.5kb downstream 0.5kb downstream 500 false Bd1: 6007291-6007790 Brachypodium distachyon
Bradi1g08510 1.0kb upstream 1.0kb upstream 3926 true Bd1: 6003365-6007290 Brachypodium distachyon
Bradi1g08510 1.0kb upstream 1.0kb upstream 1000 false Bd1: 6003365-6004364 Brachypodium distachyon
Bradi1g08510 1.0kb downstream 1.0kb downstream 3926 true Bd1: 6004365-6008290 Brachypodium distachyon
Bradi1g08510 1.0kb downstream 1.0kb downstream 1000 false Bd1: 6007291-6008290 Brachypodium distachyon
Bradi1g08510 2.0kb upstream 2.0kb upstream 4926 true Bd1: 6002365-6007290 Brachypodium distachyon
Bradi1g08510 2.0kb upstream 2.0kb upstream 2000 false Bd1: 6002365-6004364 Brachypodium distachyon
Bradi1g08510 2.0kb downstream 2.0kb downstream 4926 true Bd1: 6004365-6009290 Brachypodium distachyon
Bradi1g08510 2.0kb downstream 2.0kb downstream 2000 false Bd1: 6007291-6009290 Brachypodium distachyon
Bradi1g08510 5.0kb upstream 5.0kb upstream 7926 true Bd1: 5999365-6007290 Brachypodium distachyon
Bradi1g08510 5.0kb upstream 5.0kb upstream 5000 false Bd1: 5999365-6004364 Brachypodium distachyon
Bradi1g08510 5.0kb downstream 5.0kb downstream 7926 true Bd1: 6004365-6012290 Brachypodium distachyon
Bradi1g08510 5.0kb downstream 5.0kb downstream 5000 false Bd1: 6007291-6012290 Brachypodium distachyon
Bradi1g08510 10.0kb upstream 10.0kb upstream 12926 true Bd1: 5994365-6007290 Brachypodium distachyon
Bradi1g08510 10.0kb upstream 10.0kb upstream 10000 false Bd1: 5994365-6004364 Brachypodium distachyon
Bradi1g08510 10.0kb downstream 10.0kb downstream 12926 true Bd1: 6004365-6017290 Brachypodium distachyon
Bradi1g08510 10.0kb downstream 10.0kb downstream 10000 false Bd1: 6007291-6017290 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124570894 5269 Grass View MSA
122046706 5273 Angiosperm View MSA
121343893 5274 Embryophyte View MSA
123425417 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.781        
cufflinks 4.12        
cufflinks 4.1        
cufflinks 4.518        
cufflinks 3.338        
cufflinks 3.835        
cufflinks 3.773        
cufflinks 5.596        
cufflinks 4.522        
cufflinks 5.269        
cufflinks 2.604       Low
cufflinks 3.819        
cufflinks 1.737       Low
cufflinks 2.124       Low
cufflinks 3.086        
cufflinks 3.511        
cufflinks 5.425        
cufflinks 4.986        
cufflinks 5.103        
cufflinks 1.849       Low
cufflinks 5.888        
cufflinks 4.383        
cufflinks 5.409        
cufflinks 4.321        
cufflinks 4.195        
cufflinks 4.752        
cufflinks 2.995        
cufflinks 4.745        
cufflinks 4.207        
cufflinks 4.553        

0 Strain