Gene : Bradi1g13890 B. distachyon v3.1
Defline:  (1 of 12) PF00651//PF03000 - BTB/POZ domain (BTB) // NPH3 family (NPH3) Genomic Order:  1756
Name:  ? Bradi1g13890 Secondary Identifier:  ? PAC:32806762
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g13890 0.5kb upstream 0.5kb upstream 5858 true Bd1: 10734912-10740769 Brachypodium distachyon
Bradi1g13890 0.5kb upstream 0.5kb upstream 500 false Bd1: 10734912-10735411 Brachypodium distachyon
Bradi1g13890 0.5kb downstream 0.5kb downstream 5858 true Bd1: 10735412-10741269 Brachypodium distachyon
Bradi1g13890 0.5kb downstream 0.5kb downstream 500 false Bd1: 10740770-10741269 Brachypodium distachyon
Bradi1g13890 1.0kb upstream 1.0kb upstream 6358 true Bd1: 10734412-10740769 Brachypodium distachyon
Bradi1g13890 1.0kb upstream 1.0kb upstream 1000 false Bd1: 10734412-10735411 Brachypodium distachyon
Bradi1g13890 1.0kb downstream 1.0kb downstream 6358 true Bd1: 10735412-10741769 Brachypodium distachyon
Bradi1g13890 1.0kb downstream 1.0kb downstream 1000 false Bd1: 10740770-10741769 Brachypodium distachyon
Bradi1g13890 2.0kb upstream 2.0kb upstream 7358 true Bd1: 10733412-10740769 Brachypodium distachyon
Bradi1g13890 2.0kb upstream 2.0kb upstream 2000 false Bd1: 10733412-10735411 Brachypodium distachyon
Bradi1g13890 2.0kb downstream 2.0kb downstream 7358 true Bd1: 10735412-10742769 Brachypodium distachyon
Bradi1g13890 2.0kb downstream 2.0kb downstream 2000 false Bd1: 10740770-10742769 Brachypodium distachyon
Bradi1g13890 5.0kb upstream 5.0kb upstream 10358 true Bd1: 10730412-10740769 Brachypodium distachyon
Bradi1g13890 5.0kb upstream 5.0kb upstream 5000 false Bd1: 10730412-10735411 Brachypodium distachyon
Bradi1g13890 5.0kb downstream 5.0kb downstream 10358 true Bd1: 10735412-10745769 Brachypodium distachyon
Bradi1g13890 5.0kb downstream 5.0kb downstream 5000 false Bd1: 10740770-10745769 Brachypodium distachyon
Bradi1g13890 10.0kb upstream 10.0kb upstream 15358 true Bd1: 10725412-10740769 Brachypodium distachyon
Bradi1g13890 10.0kb upstream 10.0kb upstream 10000 false Bd1: 10725412-10735411 Brachypodium distachyon
Bradi1g13890 10.0kb downstream 10.0kb downstream 15358 true Bd1: 10735412-10750769 Brachypodium distachyon
Bradi1g13890 10.0kb downstream 10.0kb downstream 10000 false Bd1: 10740770-10750769 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124569474 5269 Grass View MSA
122046069 5273 Angiosperm View MSA
121347106 5274 Embryophyte View MSA
123380493 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.579        
cufflinks 5.181        
cufflinks 5.766        
cufflinks 4.4        
cufflinks 2.537        
cufflinks 4.89        
cufflinks 4.245        
cufflinks 5.082        
cufflinks 4.896        
cufflinks 4.024        
cufflinks 1.814       Low
cufflinks 7.26       High
cufflinks 3.487        
cufflinks 1.376       Low
cufflinks 6.4        
cufflinks 4.597        
cufflinks 4.343        
cufflinks 10.274       High
cufflinks 2.911        
cufflinks 0.974       Low
cufflinks 5.244        
cufflinks 5.367        
cufflinks 5.066        
cufflinks 5.109        
cufflinks 3.998        
cufflinks 4.743        
cufflinks 2.471        
cufflinks 4.352        
cufflinks 4.882        
cufflinks 10.2       High

0 Strain