Gene : Bradi1g11620 B. distachyon v3.1
Defline:  (1 of 1) PTHR12725//PTHR12725:SF81 - HALOACID DEHALOGENASE-LIKE HYDROLASE // SUBFAMILY NOT NAMED Genomic Order:  1460
Name:  ? Bradi1g11620 Secondary Identifier:  ? PAC:32800933
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-7204 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g11620 0.5kb upstream 0.5kb upstream 3611 true Bd1: 8628342-8631952 Brachypodium distachyon
Bradi1g11620 0.5kb upstream 0.5kb upstream 500 false Bd1: 8631453-8631952 Brachypodium distachyon
Bradi1g11620 0.5kb downstream 0.5kb downstream 3611 true Bd1: 8627842-8631452 Brachypodium distachyon
Bradi1g11620 0.5kb downstream 0.5kb downstream 500 false Bd1: 8627842-8628341 Brachypodium distachyon
Bradi1g11620 1.0kb upstream 1.0kb upstream 4111 true Bd1: 8628342-8632452 Brachypodium distachyon
Bradi1g11620 1.0kb upstream 1.0kb upstream 1000 false Bd1: 8631453-8632452 Brachypodium distachyon
Bradi1g11620 1.0kb downstream 1.0kb downstream 4111 true Bd1: 8627342-8631452 Brachypodium distachyon
Bradi1g11620 1.0kb downstream 1.0kb downstream 1000 false Bd1: 8627342-8628341 Brachypodium distachyon
Bradi1g11620 2.0kb upstream 2.0kb upstream 5111 true Bd1: 8628342-8633452 Brachypodium distachyon
Bradi1g11620 2.0kb upstream 2.0kb upstream 2000 false Bd1: 8631453-8633452 Brachypodium distachyon
Bradi1g11620 2.0kb downstream 2.0kb downstream 5111 true Bd1: 8626342-8631452 Brachypodium distachyon
Bradi1g11620 2.0kb downstream 2.0kb downstream 2000 false Bd1: 8626342-8628341 Brachypodium distachyon
Bradi1g11620 5.0kb upstream 5.0kb upstream 8111 true Bd1: 8628342-8636452 Brachypodium distachyon
Bradi1g11620 5.0kb upstream 5.0kb upstream 5000 false Bd1: 8631453-8636452 Brachypodium distachyon
Bradi1g11620 5.0kb downstream 5.0kb downstream 8111 true Bd1: 8623342-8631452 Brachypodium distachyon
Bradi1g11620 5.0kb downstream 5.0kb downstream 5000 false Bd1: 8623342-8628341 Brachypodium distachyon
Bradi1g11620 10.0kb upstream 10.0kb upstream 13111 true Bd1: 8628342-8641452 Brachypodium distachyon
Bradi1g11620 10.0kb upstream 10.0kb upstream 10000 false Bd1: 8631453-8641452 Brachypodium distachyon
Bradi1g11620 10.0kb downstream 10.0kb downstream 13111 true Bd1: 8618342-8631452 Brachypodium distachyon
Bradi1g11620 10.0kb downstream 10.0kb downstream 10000 false Bd1: 8618342-8628341 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124576602 5269 Grass View MSA
122048898 5273 Angiosperm View MSA
121311158 5274 Embryophyte View MSA
123426890 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.782        
cufflinks 1.0        
cufflinks 0.744        
cufflinks 0.249       Low
cufflinks 50.774     High High
cufflinks 1.792        
cufflinks 2.513        
cufflinks 0.878        
cufflinks 0.837        
cufflinks 1.709        
cufflinks 5.83        
cufflinks 1.351        
cufflinks 3.787        
cufflinks 2.171        
cufflinks 1.206        
cufflinks 3.666        
cufflinks 1.095        
cufflinks 4.961        
cufflinks 9.79       High
cufflinks 42.774     High High
cufflinks 1.689        
cufflinks 1.022        
cufflinks 0.523       Low
cufflinks 1.093        
cufflinks 2.199        
cufflinks 0.845        
cufflinks 1.086        
cufflinks 1.584        
cufflinks 0.731        
cufflinks 1.991        

0 Strain