Gene : Bradi1g11520 B. distachyon v3.1
Defline:  (1 of 1) K03934 - NADH dehydrogenase (ubiquinone) Fe-S protein 1 (NDUFS1) Genomic Order:  1449
Name:  ? Bradi1g11520 Secondary Identifier:  ? PAC:32804025
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-3781 Brachypodium distachyon pathologic  
Bdistachyon PWY-4302 Brachypodium distachyon pathologic  
Bdistachyon PWY-5083 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g11520 0.5kb upstream 0.5kb upstream 5273 true Bd1: 8564147-8569419 Brachypodium distachyon
Bradi1g11520 0.5kb upstream 0.5kb upstream 500 false Bd1: 8568920-8569419 Brachypodium distachyon
Bradi1g11520 0.5kb downstream 0.5kb downstream 5273 true Bd1: 8563647-8568919 Brachypodium distachyon
Bradi1g11520 0.5kb downstream 0.5kb downstream 500 false Bd1: 8563647-8564146 Brachypodium distachyon
Bradi1g11520 1.0kb upstream 1.0kb upstream 5773 true Bd1: 8564147-8569919 Brachypodium distachyon
Bradi1g11520 1.0kb upstream 1.0kb upstream 1000 false Bd1: 8568920-8569919 Brachypodium distachyon
Bradi1g11520 1.0kb downstream 1.0kb downstream 5773 true Bd1: 8563147-8568919 Brachypodium distachyon
Bradi1g11520 1.0kb downstream 1.0kb downstream 1000 false Bd1: 8563147-8564146 Brachypodium distachyon
Bradi1g11520 2.0kb upstream 2.0kb upstream 6773 true Bd1: 8564147-8570919 Brachypodium distachyon
Bradi1g11520 2.0kb upstream 2.0kb upstream 2000 false Bd1: 8568920-8570919 Brachypodium distachyon
Bradi1g11520 2.0kb downstream 2.0kb downstream 6773 true Bd1: 8562147-8568919 Brachypodium distachyon
Bradi1g11520 2.0kb downstream 2.0kb downstream 2000 false Bd1: 8562147-8564146 Brachypodium distachyon
Bradi1g11520 5.0kb upstream 5.0kb upstream 9773 true Bd1: 8564147-8573919 Brachypodium distachyon
Bradi1g11520 5.0kb upstream 5.0kb upstream 5000 false Bd1: 8568920-8573919 Brachypodium distachyon
Bradi1g11520 5.0kb downstream 5.0kb downstream 9773 true Bd1: 8559147-8568919 Brachypodium distachyon
Bradi1g11520 5.0kb downstream 5.0kb downstream 5000 false Bd1: 8559147-8564146 Brachypodium distachyon
Bradi1g11520 10.0kb upstream 10.0kb upstream 14773 true Bd1: 8564147-8578919 Brachypodium distachyon
Bradi1g11520 10.0kb upstream 10.0kb upstream 10000 false Bd1: 8568920-8578919 Brachypodium distachyon
Bradi1g11520 10.0kb downstream 10.0kb downstream 14773 true Bd1: 8554147-8568919 Brachypodium distachyon
Bradi1g11520 10.0kb downstream 10.0kb downstream 10000 false Bd1: 8554147-8564146 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124571423 5269 Grass View MSA
122044121 5273 Angiosperm View MSA
121350903 5274 Embryophyte View MSA
123424434 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 34.578     High  
cufflinks 37.077     High  
cufflinks 38.23     High  
cufflinks 35.439     High  
cufflinks 25.162     High  
cufflinks 34.88     High  
cufflinks 32.898     High  
cufflinks 33.68     High  
cufflinks 33.772     High  
cufflinks 29.961     High  
cufflinks 18.672     High Low
cufflinks 37.703     High  
cufflinks 21.351     High Low
cufflinks 19.383     High Low
cufflinks 27.591     High  
cufflinks 39.269     High  
cufflinks 29.942     High  
cufflinks 71.186     High High
cufflinks 29.553     High  
cufflinks 24.413     High  
cufflinks 55.517     High High
cufflinks 34.717     High  
cufflinks 30.938     High  
cufflinks 33.167     High  
cufflinks 32.019     High  
cufflinks 35.472     High  
cufflinks 23.639     High  
cufflinks 32.205     High  
cufflinks 34.658     High  
cufflinks 52.485     High High

0 Strain