Gene : Bradi1g19380 B. distachyon v3.1
Defline:  (1 of 2) PTHR13377//PTHR13377:SF4 - PLACENTAL PROTEIN 6 Genomic Order:  2422
Name:  ? Bradi1g19380 Secondary Identifier:  ? PAC:32800696
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g19380 0.5kb upstream 0.5kb upstream 4971 true Bd1: 15500861-15505831 Brachypodium distachyon
Bradi1g19380 0.5kb upstream 0.5kb upstream 500 false Bd1: 15505332-15505831 Brachypodium distachyon
Bradi1g19380 0.5kb downstream 0.5kb downstream 4971 true Bd1: 15500361-15505331 Brachypodium distachyon
Bradi1g19380 0.5kb downstream 0.5kb downstream 500 false Bd1: 15500361-15500860 Brachypodium distachyon
Bradi1g19380 1.0kb upstream 1.0kb upstream 5471 true Bd1: 15500861-15506331 Brachypodium distachyon
Bradi1g19380 1.0kb upstream 1.0kb upstream 1000 false Bd1: 15505332-15506331 Brachypodium distachyon
Bradi1g19380 1.0kb downstream 1.0kb downstream 5471 true Bd1: 15499861-15505331 Brachypodium distachyon
Bradi1g19380 1.0kb downstream 1.0kb downstream 1000 false Bd1: 15499861-15500860 Brachypodium distachyon
Bradi1g19380 2.0kb upstream 2.0kb upstream 6471 true Bd1: 15500861-15507331 Brachypodium distachyon
Bradi1g19380 2.0kb upstream 2.0kb upstream 2000 false Bd1: 15505332-15507331 Brachypodium distachyon
Bradi1g19380 2.0kb downstream 2.0kb downstream 6471 true Bd1: 15498861-15505331 Brachypodium distachyon
Bradi1g19380 2.0kb downstream 2.0kb downstream 2000 false Bd1: 15498861-15500860 Brachypodium distachyon
Bradi1g19380 5.0kb upstream 5.0kb upstream 9471 true Bd1: 15500861-15510331 Brachypodium distachyon
Bradi1g19380 5.0kb upstream 5.0kb upstream 5000 false Bd1: 15505332-15510331 Brachypodium distachyon
Bradi1g19380 5.0kb downstream 5.0kb downstream 9471 true Bd1: 15495861-15505331 Brachypodium distachyon
Bradi1g19380 5.0kb downstream 5.0kb downstream 5000 false Bd1: 15495861-15500860 Brachypodium distachyon
Bradi1g19380 10.0kb upstream 10.0kb upstream 14471 true Bd1: 15500861-15515331 Brachypodium distachyon
Bradi1g19380 10.0kb upstream 10.0kb upstream 10000 false Bd1: 15505332-15515331 Brachypodium distachyon
Bradi1g19380 10.0kb downstream 10.0kb downstream 14471 true Bd1: 15490861-15505331 Brachypodium distachyon
Bradi1g19380 10.0kb downstream 10.0kb downstream 10000 false Bd1: 15490861-15500860 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124574534 5269 Grass View MSA
122043069 5273 Angiosperm View MSA
121350097 5274 Embryophyte View MSA
123424498 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.611        
cufflinks 8.605        
cufflinks 9.105        
cufflinks 9.389        
cufflinks 7.578        
cufflinks 8.059        
cufflinks 8.266        
cufflinks 6.94        
cufflinks 7.042        
cufflinks 6.788        
cufflinks 1.374       Low
cufflinks 7.729        
cufflinks 1.382       Low
cufflinks 1.253       Low
cufflinks 3.804        
cufflinks 8.992        
cufflinks 13.209     High  
cufflinks 13.519     High  
cufflinks 18.299     High High
cufflinks 10.084        
cufflinks 20.352     High High
cufflinks 8.01        
cufflinks 6.228        
cufflinks 8.126        
cufflinks 7.97        
cufflinks 9.446        
cufflinks 1.695       Low
cufflinks 8.43        
cufflinks 8.307        
cufflinks 17.06     High High

0 Strain