Gene : Bradi1g25360 B. distachyon v3.1
Defline:  (1 of 140) PF13812 - Pentatricopeptide repeat domain (PPR_3) Genomic Order:  3193
Name:  ? Bradi1g25360 Secondary Identifier:  ? PAC:32802611
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g25360 0.5kb upstream 0.5kb upstream 10243 true Bd1: 20642264-20652506 Brachypodium distachyon
Bradi1g25360 0.5kb upstream 0.5kb upstream 500 false Bd1: 20652007-20652506 Brachypodium distachyon
Bradi1g25360 0.5kb downstream 0.5kb downstream 10243 true Bd1: 20641764-20652006 Brachypodium distachyon
Bradi1g25360 0.5kb downstream 0.5kb downstream 500 false Bd1: 20641764-20642263 Brachypodium distachyon
Bradi1g25360 1.0kb upstream 1.0kb upstream 10743 true Bd1: 20642264-20653006 Brachypodium distachyon
Bradi1g25360 1.0kb upstream 1.0kb upstream 1000 false Bd1: 20652007-20653006 Brachypodium distachyon
Bradi1g25360 1.0kb downstream 1.0kb downstream 10743 true Bd1: 20641264-20652006 Brachypodium distachyon
Bradi1g25360 1.0kb downstream 1.0kb downstream 1000 false Bd1: 20641264-20642263 Brachypodium distachyon
Bradi1g25360 2.0kb upstream 2.0kb upstream 11743 true Bd1: 20642264-20654006 Brachypodium distachyon
Bradi1g25360 2.0kb upstream 2.0kb upstream 2000 false Bd1: 20652007-20654006 Brachypodium distachyon
Bradi1g25360 2.0kb downstream 2.0kb downstream 11743 true Bd1: 20640264-20652006 Brachypodium distachyon
Bradi1g25360 2.0kb downstream 2.0kb downstream 2000 false Bd1: 20640264-20642263 Brachypodium distachyon
Bradi1g25360 5.0kb upstream 5.0kb upstream 14743 true Bd1: 20642264-20657006 Brachypodium distachyon
Bradi1g25360 5.0kb upstream 5.0kb upstream 5000 false Bd1: 20652007-20657006 Brachypodium distachyon
Bradi1g25360 5.0kb downstream 5.0kb downstream 14743 true Bd1: 20637264-20652006 Brachypodium distachyon
Bradi1g25360 5.0kb downstream 5.0kb downstream 5000 false Bd1: 20637264-20642263 Brachypodium distachyon
Bradi1g25360 10.0kb upstream 10.0kb upstream 19743 true Bd1: 20642264-20662006 Brachypodium distachyon
Bradi1g25360 10.0kb upstream 10.0kb upstream 10000 false Bd1: 20652007-20662006 Brachypodium distachyon
Bradi1g25360 10.0kb downstream 10.0kb downstream 19743 true Bd1: 20632264-20652006 Brachypodium distachyon
Bradi1g25360 10.0kb downstream 10.0kb downstream 10000 false Bd1: 20632264-20642263 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124579518 5269 Grass View MSA
122048691 5273 Angiosperm View MSA
121348427 5274 Embryophyte View MSA
123380862 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.45        
cufflinks 3.617        
cufflinks 3.534        
cufflinks 5.271       High
cufflinks 3.029        
cufflinks 3.61        
cufflinks 3.584        
cufflinks 3.043        
cufflinks 3.657        
cufflinks 4.693        
cufflinks 3.451        
cufflinks 3.634        
cufflinks 3.861        
cufflinks 4.613        
cufflinks 3.448        
cufflinks 3.031        
cufflinks 4.331        
cufflinks 0.814       Low
cufflinks 3.214        
cufflinks 2.421        
cufflinks 3.573        
cufflinks 3.539        
cufflinks 3.383        
cufflinks 3.957        
cufflinks 4.949        
cufflinks 4.624        
cufflinks 3.337        
cufflinks 3.996        
cufflinks 4.112        
cufflinks 4.02        

0 Strain