Gene : Bradi1g29590 B. distachyon v3.1
Defline:  (1 of 1) PTHR31480:SF2 - PHYTOENE SYNTHASE, CHLOROPLASTIC Genomic Order:  3747
Name:  ? Bradi1g29590 Secondary Identifier:  ? PAC:32800913
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon CAROTENOID-PWY Brachypodium distachyon pathologic  
Bdistachyon PWY-6475 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g29590 0.5kb upstream 0.5kb upstream 4503 true Bd1: 25177142-25181644 Brachypodium distachyon
Bradi1g29590 0.5kb upstream 0.5kb upstream 500 false Bd1: 25177142-25177641 Brachypodium distachyon
Bradi1g29590 0.5kb downstream 0.5kb downstream 4503 true Bd1: 25177642-25182144 Brachypodium distachyon
Bradi1g29590 0.5kb downstream 0.5kb downstream 500 false Bd1: 25181645-25182144 Brachypodium distachyon
Bradi1g29590 1.0kb upstream 1.0kb upstream 5003 true Bd1: 25176642-25181644 Brachypodium distachyon
Bradi1g29590 1.0kb upstream 1.0kb upstream 1000 false Bd1: 25176642-25177641 Brachypodium distachyon
Bradi1g29590 1.0kb downstream 1.0kb downstream 5003 true Bd1: 25177642-25182644 Brachypodium distachyon
Bradi1g29590 1.0kb downstream 1.0kb downstream 1000 false Bd1: 25181645-25182644 Brachypodium distachyon
Bradi1g29590 2.0kb upstream 2.0kb upstream 6003 true Bd1: 25175642-25181644 Brachypodium distachyon
Bradi1g29590 2.0kb upstream 2.0kb upstream 2000 false Bd1: 25175642-25177641 Brachypodium distachyon
Bradi1g29590 2.0kb downstream 2.0kb downstream 6003 true Bd1: 25177642-25183644 Brachypodium distachyon
Bradi1g29590 2.0kb downstream 2.0kb downstream 2000 false Bd1: 25181645-25183644 Brachypodium distachyon
Bradi1g29590 5.0kb upstream 5.0kb upstream 9003 true Bd1: 25172642-25181644 Brachypodium distachyon
Bradi1g29590 5.0kb upstream 5.0kb upstream 5000 false Bd1: 25172642-25177641 Brachypodium distachyon
Bradi1g29590 5.0kb downstream 5.0kb downstream 9003 true Bd1: 25177642-25186644 Brachypodium distachyon
Bradi1g29590 5.0kb downstream 5.0kb downstream 5000 false Bd1: 25181645-25186644 Brachypodium distachyon
Bradi1g29590 10.0kb upstream 10.0kb upstream 14003 true Bd1: 25167642-25181644 Brachypodium distachyon
Bradi1g29590 10.0kb upstream 10.0kb upstream 10000 false Bd1: 25167642-25177641 Brachypodium distachyon
Bradi1g29590 10.0kb downstream 10.0kb downstream 14003 true Bd1: 25177642-25191644 Brachypodium distachyon
Bradi1g29590 10.0kb downstream 10.0kb downstream 10000 false Bd1: 25181645-25191644 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041269 5273 Angiosperm View MSA
124577082 5269 Grass View MSA
121345575 5274 Embryophyte View MSA
123426823 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 22.231     High  
cufflinks 29.085     High  
cufflinks 33.89     High  
cufflinks 37.012     High  
cufflinks 22.525     High  
cufflinks 44.427     High  
cufflinks 26.85     High  
cufflinks 69.985     High  
cufflinks 66.542     High  
cufflinks 57.332     High  
cufflinks 51.938     High  
cufflinks 60.309     High  
cufflinks 92.791     High High
cufflinks 81.951     High  
cufflinks 64.54     High  
cufflinks 34.605     High  
cufflinks 56.52     High  
cufflinks 1.044       Low
cufflinks 11.609        
cufflinks 7.457       Low
cufflinks 22.948     High  
cufflinks 57.499     High  
cufflinks 68.02     High  
cufflinks 71.878     High  
cufflinks 52.363     High  
cufflinks 36.085     High  
cufflinks 87.027     High High
cufflinks 39.797     High  
cufflinks 50.54     High  
cufflinks 18.511     High  

0 Strain