Gene : Bradi1g27250 B. distachyon v3.1
Defline:  (1 of 2) K12589 - exosome complex component RRP42 (RRP42, EXOSC7) Genomic Order:  3429
Name:  ? Bradi1g27250 Secondary Identifier:  ? PAC:32801527
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g27250 0.5kb upstream 0.5kb upstream 5286 true Bd1: 22357442-22362727 Brachypodium distachyon
Bradi1g27250 0.5kb upstream 0.5kb upstream 500 false Bd1: 22357442-22357941 Brachypodium distachyon
Bradi1g27250 0.5kb downstream 0.5kb downstream 5286 true Bd1: 22357942-22363227 Brachypodium distachyon
Bradi1g27250 0.5kb downstream 0.5kb downstream 500 false Bd1: 22362728-22363227 Brachypodium distachyon
Bradi1g27250 1.0kb upstream 1.0kb upstream 5786 true Bd1: 22356942-22362727 Brachypodium distachyon
Bradi1g27250 1.0kb upstream 1.0kb upstream 1000 false Bd1: 22356942-22357941 Brachypodium distachyon
Bradi1g27250 1.0kb downstream 1.0kb downstream 5786 true Bd1: 22357942-22363727 Brachypodium distachyon
Bradi1g27250 1.0kb downstream 1.0kb downstream 1000 false Bd1: 22362728-22363727 Brachypodium distachyon
Bradi1g27250 2.0kb upstream 2.0kb upstream 6786 true Bd1: 22355942-22362727 Brachypodium distachyon
Bradi1g27250 2.0kb upstream 2.0kb upstream 2000 false Bd1: 22355942-22357941 Brachypodium distachyon
Bradi1g27250 2.0kb downstream 2.0kb downstream 6786 true Bd1: 22357942-22364727 Brachypodium distachyon
Bradi1g27250 2.0kb downstream 2.0kb downstream 2000 false Bd1: 22362728-22364727 Brachypodium distachyon
Bradi1g27250 5.0kb upstream 5.0kb upstream 9786 true Bd1: 22352942-22362727 Brachypodium distachyon
Bradi1g27250 5.0kb upstream 5.0kb upstream 5000 false Bd1: 22352942-22357941 Brachypodium distachyon
Bradi1g27250 5.0kb downstream 5.0kb downstream 9786 true Bd1: 22357942-22367727 Brachypodium distachyon
Bradi1g27250 5.0kb downstream 5.0kb downstream 5000 false Bd1: 22362728-22367727 Brachypodium distachyon
Bradi1g27250 10.0kb upstream 10.0kb upstream 14786 true Bd1: 22347942-22362727 Brachypodium distachyon
Bradi1g27250 10.0kb upstream 10.0kb upstream 10000 false Bd1: 22347942-22357941 Brachypodium distachyon
Bradi1g27250 10.0kb downstream 10.0kb downstream 14786 true Bd1: 22357942-22372727 Brachypodium distachyon
Bradi1g27250 10.0kb downstream 10.0kb downstream 10000 false Bd1: 22362728-22372727 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124579244 5269 Grass View MSA
122044791 5273 Angiosperm View MSA
121345379 5274 Embryophyte View MSA
123428075 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.766        
cufflinks 0.903        
cufflinks 0.783        
cufflinks 0.956        
cufflinks 0.498        
cufflinks 0.675        
cufflinks 0.735        
cufflinks 0.653        
cufflinks 0.686        
cufflinks 0.686        
cufflinks 0.354       Low
cufflinks 0.47        
cufflinks 0.191       Low
cufflinks 0.247       Low
cufflinks 0.279       Low
cufflinks 0.771        
cufflinks 0.777        
cufflinks 1.317       High
cufflinks 0.943        
cufflinks 0.369       Low
cufflinks 0.734        
cufflinks 0.56        
cufflinks 0.567        
cufflinks 0.567        
cufflinks 0.815        
cufflinks 0.727        
cufflinks 0.262       Low
cufflinks 0.614        
cufflinks 0.601        
cufflinks 0.802        

0 Strain