Gene : Bradi1g33530 B. distachyon v3.1
Defline:  (1 of 1) PTHR11014//PTHR11014:SF62 - PEPTIDASE M20 FAMILY MEMBER // IAA-AMINO ACID HYDROLASE ILR1-LIKE 6 Genomic Order:  4272
Name:  ? Bradi1g33530 Secondary Identifier:  ? PAC:32793345
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g33530 0.5kb upstream 0.5kb upstream 5005 true Bd1: 29192992-29197996 Brachypodium distachyon
Bradi1g33530 0.5kb upstream 0.5kb upstream 500 false Bd1: 29192992-29193491 Brachypodium distachyon
Bradi1g33530 0.5kb downstream 0.5kb downstream 5005 true Bd1: 29193492-29198496 Brachypodium distachyon
Bradi1g33530 0.5kb downstream 0.5kb downstream 500 false Bd1: 29197997-29198496 Brachypodium distachyon
Bradi1g33530 1.0kb upstream 1.0kb upstream 5505 true Bd1: 29192492-29197996 Brachypodium distachyon
Bradi1g33530 1.0kb upstream 1.0kb upstream 1000 false Bd1: 29192492-29193491 Brachypodium distachyon
Bradi1g33530 1.0kb downstream 1.0kb downstream 5505 true Bd1: 29193492-29198996 Brachypodium distachyon
Bradi1g33530 1.0kb downstream 1.0kb downstream 1000 false Bd1: 29197997-29198996 Brachypodium distachyon
Bradi1g33530 2.0kb upstream 2.0kb upstream 6505 true Bd1: 29191492-29197996 Brachypodium distachyon
Bradi1g33530 2.0kb upstream 2.0kb upstream 2000 false Bd1: 29191492-29193491 Brachypodium distachyon
Bradi1g33530 2.0kb downstream 2.0kb downstream 6505 true Bd1: 29193492-29199996 Brachypodium distachyon
Bradi1g33530 2.0kb downstream 2.0kb downstream 2000 false Bd1: 29197997-29199996 Brachypodium distachyon
Bradi1g33530 5.0kb upstream 5.0kb upstream 9505 true Bd1: 29188492-29197996 Brachypodium distachyon
Bradi1g33530 5.0kb upstream 5.0kb upstream 5000 false Bd1: 29188492-29193491 Brachypodium distachyon
Bradi1g33530 5.0kb downstream 5.0kb downstream 9505 true Bd1: 29193492-29202996 Brachypodium distachyon
Bradi1g33530 5.0kb downstream 5.0kb downstream 5000 false Bd1: 29197997-29202996 Brachypodium distachyon
Bradi1g33530 10.0kb upstream 10.0kb upstream 14505 true Bd1: 29183492-29197996 Brachypodium distachyon
Bradi1g33530 10.0kb upstream 10.0kb upstream 10000 false Bd1: 29183492-29193491 Brachypodium distachyon
Bradi1g33530 10.0kb downstream 10.0kb downstream 14505 true Bd1: 29193492-29207996 Brachypodium distachyon
Bradi1g33530 10.0kb downstream 10.0kb downstream 10000 false Bd1: 29197997-29207996 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124580515 5269 Grass View MSA
122047186 5273 Angiosperm View MSA
121350602 5274 Embryophyte View MSA
123427442 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.515        
cufflinks 0.325        
cufflinks 0.453        
cufflinks 0.337        
cufflinks 2.53       High
cufflinks 0.208       Low
cufflinks 0.373        
cufflinks 0.234        
cufflinks 0.171       Low
cufflinks 0.532        
cufflinks 0.311        
cufflinks 0.14       Low
cufflinks 0.279        
cufflinks 0.188       Low
cufflinks 0.486        
cufflinks 0.293        
cufflinks 0.34        
cufflinks 1.084       High
cufflinks 1.028       High
cufflinks 1.882       High
cufflinks 1.074       High
cufflinks 0.34        
cufflinks 0.371        
cufflinks 0.152       Low
cufflinks 0.233        
cufflinks 0.505        
cufflinks 0.476        
cufflinks 0.692        
cufflinks 0.473        
cufflinks 0.537        

0 Strain