Gene : Bradi5g20927 B. distachyon v3.1
Defline:  (1 of 1) PTHR10459:SF72 - DNA LIGASE 4 Genomic Order:  2434
Name:  ? Bradi5g20927 Secondary Identifier:  ? PAC:32811539
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi5g20927 0.5kb upstream 0.5kb upstream 9239 true Bd5: 23864449-23873687 Brachypodium distachyon
Bradi5g20927 0.5kb upstream 0.5kb upstream 500 false Bd5: 23873188-23873687 Brachypodium distachyon
Bradi5g20927 0.5kb downstream 0.5kb downstream 9239 true Bd5: 23863949-23873187 Brachypodium distachyon
Bradi5g20927 0.5kb downstream 0.5kb downstream 500 false Bd5: 23863949-23864448 Brachypodium distachyon
Bradi5g20927 1.0kb upstream 1.0kb upstream 9739 true Bd5: 23864449-23874187 Brachypodium distachyon
Bradi5g20927 1.0kb upstream 1.0kb upstream 1000 false Bd5: 23873188-23874187 Brachypodium distachyon
Bradi5g20927 1.0kb downstream 1.0kb downstream 9739 true Bd5: 23863449-23873187 Brachypodium distachyon
Bradi5g20927 1.0kb downstream 1.0kb downstream 1000 false Bd5: 23863449-23864448 Brachypodium distachyon
Bradi5g20927 2.0kb upstream 2.0kb upstream 10739 true Bd5: 23864449-23875187 Brachypodium distachyon
Bradi5g20927 2.0kb upstream 2.0kb upstream 2000 false Bd5: 23873188-23875187 Brachypodium distachyon
Bradi5g20927 2.0kb downstream 2.0kb downstream 10739 true Bd5: 23862449-23873187 Brachypodium distachyon
Bradi5g20927 2.0kb downstream 2.0kb downstream 2000 false Bd5: 23862449-23864448 Brachypodium distachyon
Bradi5g20927 5.0kb upstream 5.0kb upstream 13739 true Bd5: 23864449-23878187 Brachypodium distachyon
Bradi5g20927 5.0kb upstream 5.0kb upstream 5000 false Bd5: 23873188-23878187 Brachypodium distachyon
Bradi5g20927 5.0kb downstream 5.0kb downstream 13739 true Bd5: 23859449-23873187 Brachypodium distachyon
Bradi5g20927 5.0kb downstream 5.0kb downstream 5000 false Bd5: 23859449-23864448 Brachypodium distachyon
Bradi5g20927 10.0kb upstream 10.0kb upstream 18739 true Bd5: 23864449-23883187 Brachypodium distachyon
Bradi5g20927 10.0kb upstream 10.0kb upstream 10000 false Bd5: 23873188-23883187 Brachypodium distachyon
Bradi5g20927 10.0kb downstream 10.0kb downstream 18739 true Bd5: 23854449-23873187 Brachypodium distachyon
Bradi5g20927 10.0kb downstream 10.0kb downstream 10000 false Bd5: 23854449-23864448 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124581424 5269 Grass View MSA
122045949 5273 Angiosperm View MSA
121346093 5274 Embryophyte View MSA
123426430 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.57        
cufflinks 1.456        
cufflinks 1.398        
cufflinks 0.985        
cufflinks 0.414       Low
cufflinks 1.36        
cufflinks 1.307        
cufflinks 1.006        
cufflinks 1.246        
cufflinks 0.707        
cufflinks 0.777        
cufflinks 1.151        
cufflinks 0.746        
cufflinks 0.517        
cufflinks 0.429       Low
cufflinks 1.262        
cufflinks 0.658        
cufflinks 2.761       High
cufflinks 1.151        
cufflinks 0.195       Low
cufflinks 0.837        
cufflinks 1.283        
cufflinks 1.028        
cufflinks 1.011        
cufflinks 1.077        
cufflinks 1.134        
cufflinks 0.762        
cufflinks 1.089        
cufflinks 1.232        
cufflinks 1.129        

0 Strain