Gene : Bradi1g29850 B. distachyon v3.1
Defline:  (1 of 1) PTHR10357:SF110 - PROTEIN T04A8.7, ISOFORM A Genomic Order:  3784
Name:  ? Bradi1g29850 Secondary Identifier:  ? PAC:32805619
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon GLYCOGENSYNTH-PWY Brachypodium distachyon pathologic  
Bdistachyon PWY-622 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g29850 0.5kb upstream 0.5kb upstream 6661 true Bd1: 25376329-25382989 Brachypodium distachyon
Bradi1g29850 0.5kb upstream 0.5kb upstream 500 false Bd1: 25376329-25376828 Brachypodium distachyon
Bradi1g29850 0.5kb downstream 0.5kb downstream 6661 true Bd1: 25376829-25383489 Brachypodium distachyon
Bradi1g29850 0.5kb downstream 0.5kb downstream 500 false Bd1: 25382990-25383489 Brachypodium distachyon
Bradi1g29850 1.0kb upstream 1.0kb upstream 7161 true Bd1: 25375829-25382989 Brachypodium distachyon
Bradi1g29850 1.0kb upstream 1.0kb upstream 1000 false Bd1: 25375829-25376828 Brachypodium distachyon
Bradi1g29850 1.0kb downstream 1.0kb downstream 7161 true Bd1: 25376829-25383989 Brachypodium distachyon
Bradi1g29850 1.0kb downstream 1.0kb downstream 1000 false Bd1: 25382990-25383989 Brachypodium distachyon
Bradi1g29850 2.0kb upstream 2.0kb upstream 8161 true Bd1: 25374829-25382989 Brachypodium distachyon
Bradi1g29850 2.0kb upstream 2.0kb upstream 2000 false Bd1: 25374829-25376828 Brachypodium distachyon
Bradi1g29850 2.0kb downstream 2.0kb downstream 8161 true Bd1: 25376829-25384989 Brachypodium distachyon
Bradi1g29850 2.0kb downstream 2.0kb downstream 2000 false Bd1: 25382990-25384989 Brachypodium distachyon
Bradi1g29850 5.0kb upstream 5.0kb upstream 11161 true Bd1: 25371829-25382989 Brachypodium distachyon
Bradi1g29850 5.0kb upstream 5.0kb upstream 5000 false Bd1: 25371829-25376828 Brachypodium distachyon
Bradi1g29850 5.0kb downstream 5.0kb downstream 11161 true Bd1: 25376829-25387989 Brachypodium distachyon
Bradi1g29850 5.0kb downstream 5.0kb downstream 5000 false Bd1: 25382990-25387989 Brachypodium distachyon
Bradi1g29850 10.0kb upstream 10.0kb upstream 16161 true Bd1: 25366829-25382989 Brachypodium distachyon
Bradi1g29850 10.0kb upstream 10.0kb upstream 10000 false Bd1: 25366829-25376828 Brachypodium distachyon
Bradi1g29850 10.0kb downstream 10.0kb downstream 16161 true Bd1: 25376829-25392989 Brachypodium distachyon
Bradi1g29850 10.0kb downstream 10.0kb downstream 10000 false Bd1: 25382990-25392989 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124568855 5269 Grass View MSA
122048123 5273 Angiosperm View MSA
121348370 5274 Embryophyte View MSA
123425739 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.803        
cufflinks 18.331     High High
cufflinks 9.124        
cufflinks 14.493     High High
cufflinks 8.113        
cufflinks 16.715     High High
cufflinks 15.339     High High
cufflinks 8.791        
cufflinks 14.492     High High
cufflinks 3.874       Low
cufflinks 8.862     High  
cufflinks 13.481     High  
cufflinks 7.378     High  
cufflinks 9.745     High  
cufflinks 6.126        
cufflinks 14.474     High High
cufflinks 8.047        
cufflinks 5.918        
cufflinks 15.243     High High
cufflinks 1.968       Low
cufflinks 5.31        
cufflinks 7.939        
cufflinks 11.256     High  
cufflinks 14.945     High High
cufflinks 16.241     High High
cufflinks 5.695        
cufflinks 7.753        
cufflinks 4.685       Low
cufflinks 5.461        
cufflinks 11.116        

0 Strain